51 datasets found

Comparison of different sample types using different primers and platforms

The objective of this project was to assess winter under-ice microbiome functionnal potential of the Great Whale River (Nunavik, Canada) and its discharge plume into Hudson Bay.

Archaea and bacteria are unique microbial communities of prokaryotic taxa that are important in the functioning of lakes Olbolosat a freshwater ecosystem and Oloiden a...

Metagenomics is widely applied to study marine microbial communities. High quality DNA samples are critical for metagenomic projects' success. In this work, we systematically...

We investigated the effect of environmental filtering depicted by salinity on the bacterial community in the water, sediment and in a host-protected system within the digestive...

Water samples were collected at sites across the Louisiana coastline. The goal was to see seasonal and temporal differences of microbial communities across the coastal northern...

A systematic analysis of the most commonly amplified 18S rRNA hypervariable regions and the effect that PCR/sequencing bias has on community representation. The V4 and V8-V9...

Our study concerns the reliability of techniques for obtaining accurate and quantitative full-length 16S rRNA amplicon sequencing data on bacterial community structure with...

In order to study the composition of the main phytoplankton communities in the water, we conducted high-throughput sequencing analysis.

Here, we report a dataset capturing the diversity and dynamics of the eukaryotic community at a 16 km stretch of the the Baltic Sea coast and the Warnow river estuary. From...

In this study, we followed the Romaine river in North-Eastern Quebec, Canada, as an example watershed over several years (2015-2018) and seasons (spring, summer, autumn). Our...

The objective of this project was to assess winter under-ice microbiome of the Great Whale River (Nunavik, Canada) and its discharge plume into Hudson Bay. Size-fractionated...

Although Brazil is well known for the great biodiversity within its flora and fauna, the microbial diversity has been poorly characterized. The geographic formation of Rio de...

Monitoring natural ecological communities is often time-, labour-, and money-consuming work. DNAs that are derived from organisms and remain in natural environments...

Long-read metabarcoding of the eukaryotic nuclear SSU-rRNA to phylogenetically and taxonomically resolve environmental diversity of the order Vampyrellida (Rhizaria).

In this study we show that the hipervariable regions V5-V7 of the 16S rRNA gene is the most appropriated to study the diversity and structure of picocyanobacterial communities...

Comparison of different sample types using different primers and platforms

The data in this project is part of CIRCLES: Controlling mIcRobiomes CircuLations for bEtter food Systems. CIRCLES is a European Union Horizon 2020 research and innovation...

Metagenomes were sampled during Synoptic Arctic Survey 2021 as project data within work package 4 - Polar viruses. We sampled the sea-surface microlayer and underlying water of...

V1-V2 region of 16S rRNA genes sequenced using Illumina samples were collected from three rivers and in the fjord of the Tyrolerfjord-Young Sound system.