52 datasets found

Comparison of different sample types using different primers and platforms

Archaea and bacteria are unique microbial communities of prokaryotic taxa that are important in the functioning of lakes Olbolosat a freshwater ecosystem and Oloiden a...

Understanding how coral holobionts, including microbial and algal symbionts, contribute to stress resilience is critical for safeguarding reef ecosystems under accelerating...

Water samples were collected at sites across the Louisiana coastline. The goal was to see seasonal and temporal differences of microbial communities across the coastal northern...

A systematic analysis of the most commonly amplified 18S rRNA hypervariable regions and the effect that PCR/sequencing bias has on community representation. The V4 and V8-V9...

In this study we show that the hipervariable regions V5-V7 of the 16S rRNA gene is the most appropriated to study the diversity and structure of picocyanobacterial communities...

Comparison of different sample types using different primers and platforms

Development and validation of phylum specific 16S primers for use with next generation sequencing for analysis of water quality

Marine sponges (phylum Porifera) are a diverse, phylogenetically deep-branching clade known for forming intimate partnerships with complex communities of microorganisms. To...

This project aimed to conduct an initial microbial community survey to assess prokaryotic diversity and potential seasonal patterns in surface waters of the Caloosahatchee River...

Using samples obtained from an oceanic transect from Jones Sound in the Canadian Arctic Archipelago, we aim to resolve the effect of using two different sequencing primers...

In order to study the composition of the main phytoplankton communities in the water, we conducted high-throughput sequencing analysis.

Here, we report a dataset capturing the diversity and dynamics of the eukaryotic community at a 16 km stretch of the the Baltic Sea coast and the Warnow river estuary. From...

In this study, we followed the Romaine river in North-Eastern Quebec, Canada, as an example watershed over several years (2015-2018) and seasons (spring, summer, autumn). Our...

The objective of this project was to evaluate the microbial community structure, diversity and environmental drivers of the Great Whale River, including some of its tributaries...

In this study we map microbial distributions within a small, natural watershed in order to examine source-sink dynamics of symbiotic microbes at the landscape scale, among...

We investigated the effect of environmental filtering depicted by salinity on the bacterial community in the water, sediment and in a host-protected system within the digestive...

Mifish Metabarcoding from 1.5L water for comparing two extraction methods

Several fungi-specific primers target the 18S rRNA gene sequence, one of the prominent markers for fungal classification. The design of most primers goes back to the last...

Presence of pathogenic bacterial pollution in coastal marine environments around the world raises environmental and public health concerns for many reasons, among them due to...