70 datasets found

These mutation accumulation lines were used in addressing mechanisms of G/C composition evolution.

soil DNA-seq reads

The Two Weeks in the World research project has resulted in a dataset of 3100 clinically relevant bacterial genomes with pertaining metadata, collected from 59 diagnostic units...

The implementation of routine whole-genome sequencing (WGS) promises to transform our ability to monitor the emergence and spread of bacterial pathogens. Here we combined WGS...

Central venous catheter-related bloodstream infection (CRBSI) is a huge public health concern with considerable impact on mortality and health costs. A three years observational...

CDC Division of Healthcare Quality Promotion’s BioProject for whole genome sequence data of Gram-negative bacteria

Whole genome sequencing of bacterial isolates over a 1-year period from a hospital's intensive care units.

The objective of the project is to address the lack of knowledge of the diversity of adaptive stress responses, such as intra- and inter-species communication, population-level...

This project is funded by the UK National Institute for Health Research to set up a full-fledged Global Health Research Unit (GHRU) through a grant awarded to the cGPS (Centre...

sequencing analysis

The aim of the proposed research is to define the nature and frequency of transfer of antimicrobial resistance (AMR) genes between pathogenic and commensal bacteria within their...

Whole genome sequencing of foodborne pathogens isolated from retail seafood as part of the US Food and Drug Administration surveillance project for NARMS

DNA extracted from 16 cases of infectious keratitis, as well as 4 control corneas with no known infection, was sequenced to detect pathogenic and non-pathogenic organisms. All...

This project is designed to uncover antimicrobial drug leads from human symbionts.

Culturable bacterial community associated with marine sponge Aplysina

Antibiotic resistanct organisms isolated from hospital surfaces or patient stool or blood culture isolates

We characterised genetic variation in a population of genome-sequenced S. aureus isolates of poultry and human origin. Genealogical analysis identified a dominant...

WGS of Staphylococcus aureus isolated from endocarditis

The use of NGS-based testing of the bacterial microbiota is often impeded by inconsistent or non-reproducible results, especially when applying different analysis pipelines and...