39 datasets found

The emergence of infectious agents poses a continual economic and environmental challenge to aquaculture production, yet the diversity, abundance and epidemiology of aquatic...

Landscape genomic analysis of Chinook salmon throughout their native range

Fecal microbiome sequence data from Oncorhynchus tshawytscha. Dataset includes samples from juveniles reared in a laboratory on different diets, juveniles reared at a hatchery...

Chinook salmon are an important species to human culture, commerce, and recreation. The goal of this study was to refine population structure analyses by using genomic level...

SNP discovery in Chinook salmon from Western Alaska

Astaxantin (Ax) is a xanthophyll carotenoid naturally produced from microalgae, phytoplankton, and yeast. The accumulation of this pigment in the muscle of Atlantic salmon and...

Estimate the number of contributors via microhaplotype genotyping of mixed-DNA samples

Thermal stress is a serious and growing challenge facing Chinook salmon (Oncorhynchus tshawytscha) living in the southern portion of their native range. River alterations have...

Paired-end 150bp Illumina reads for Johnson Creek Chinook Salmon. Males (3-5 yr olds) and females (4-5 yr olds)

In this study, we use whole-genome sequence data to identify diagnostic SNPs for the development of CRISPR-based SHERLOCK assays capable of rapidly, accurately, and sensitively...

The genome was sequenced with a combination of TruSeq long-read libraries, BAC libraries, mate-pair libraries (3-40kb) and BioNano optical maps. TruSeq and BAC libraries were...

Whole genome re-sequencing was used to measure genomic variation among and within lineages of Chinook salmon.

Production of sterile fishes through artificial retention of a third set of chromosomes (triploidy) is a sustainable alternative for aquaculture since it reduces pressure on...

RNA-sequencing of Chinook salmon exposed to hypoxic conditions

Dense SNP panels resolve closely related Chinook salmon populations

A transcriptome assessment of Chinook salmon at the time of reproduction in order to generate genomic resources used in applied studies

Genotyping paralogs in amplicon sequencing data in Chinook salmon

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Y-chromosome haplotypes are associated with variation in size and age at maturity in male Chinook salmon, additional samples

Pooled whole genome re-sequencing data from Chinook salmon (Oncorhynchus tshawytscha) was collected to screen for genomic variation underlying life-history traits. A combined...