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CHROMAS: A Computational Pipeline to Track Chromatophores and Analyze their D...
CHROMAS is distributed via the pypi package index link and is publicly released on GitLab under the3-Clause BSD License. The documentation is hosted on GitLab. This repository... -
Large-scale mapping of cortical synaptic projections with extracellular elect...
The following code serves as an example for running the spike induced fields (SIF) analysis. In this example, SIFs are extracted from multi-electrode array data recorded using... -
Encoding of mixtures in a simple olfactory system
Folder Contents Code The code tree is rooted at code. It contains three folders: util: Contains general utility functions. common: Contains commonly used functions for analysis... -
Chromosome-scale genome assembly of the European common cuttlefish Sepia offi...
Annotation files for Sepia officinalis genome assembly v1 Gene models generated using BRAKER3: braker.gtf - final gene set of BRAKER, consisting of genes predicted by AUGUSTUS... -
A claustrum in reptiles and its role in slow-wave sleep
This folder contains, single cell data set for: A claustrum in reptiles and its role in slow-wave sleep Norimoto and Fenk et.al. 2020, Nature extended Figure 3A,B 20,257 lizard... -
Evolution of pallium, hippocampus, and cortical cell types revealed by single...
Single-cell RNA-seq datasets from turtle and lizard samples, provided as Seurat objects in both .Robj and .h5seurat formats. Each dataset includes the raw gene–cell count... -
Large-scale cell-type-specific imaging of protein synthesis in a vertebrate b...
The files in this repository are raw fluorescence microscopy images of nascent protein (fluorescently labeled alkyne clicked to ANL) using an LSM880 microscope. The files were... -
Molecular diversity and evolution of neuron types in the amniote brain
Using single-cell transcriptomics, Hain et al. compared the brain of the lizard Pogona vitticeps, known as the Australian dragon, with that of the mouse.
