158 datasets found

Definition of functional regulatory regions in the vast non-coding fractions of mammalian genomes remains a daunting challenge that underscores our limited understanding of...

Sequencing data used in the manuscript including (1) The sequencing data of 16S, WMS and 2bRAD-M for MOCK (MOCK CAS and ATCC MOCK MSA 1002) and FFPE (only 2bRAD-M sequencing...

The most powerful way to study population history and natural selection is to analyze whole genome sequences, which contain all the variation that exists in each individual. To...

Leptosphaeria maculans (anamorph Phoma lingam), the causal agent of blackleg disease in Brassica napus, poses a continual threat to canola/rapeseed production The overall goal...

This study aims to characterize the human skin facial microbiome at high resolution, covering the entirety of one side of the human face. High resolution spatial profiling has...

Infections by opportunistic pathogens can lead to lactational mastitis, characterized by duct obstruction and painful inflammation in the mammary gland. Sub-acute mastitis (SAM)...

Platanus-allee, a new de novo haplotype assembler, was developed and benchmarks of haplotype construction abilities of multiple tools were performed. The target samples were...

We use a novel approach (an analysis of metatranscriptomics data) to study antibiotic resistance, a topic that poses major health care concerns. We investigate resistance gene...

rumen microbial diversity in Tan sheep

Pancreatic Ductal Adenocarcinoma (PDAC) is a highly lethal malignancy due to its propensity to invade and rapidly metastasize and remains very difficult to manage clinically....

The nature and distribution of political power in Neolithic Europe remains poorly understood. During the period, many societies began to invest heavily in monument-building,...

Early-life antibiotic use is associated with increased risk for metabolic and immunological diseases, and mouse studies indicate a causal role of the disrupted microbiome....

For further information on this study please see http://www.sanger.ac.uk/resources/downloads/bacteria/campylobacter-jejuni.html This data is part of a pre-publication release....

The oral microbiome plays key roles in human biology, health, and disease, but little is known about the global diversity, variation, or evolution of this microbial community....

Genome-wide measurements of RNA structure can be obtained using reagents that react with unpaired bases, leading to adducts that can be identified by mutational profiling on...

Uniparentally-inherited markers on mitochondrial DNA (mtDNA) and the non-recombining regions of the Y chromosome (NRY), have been used for the past 30 years to investigate the...

Aim: Kidney transplant recipients (KTR) are at an increased risk of hospitalisation and death from SARS-CoV-2 infection, and standard 2-dose vaccination schedules are typically...

Several bacterial species have been implicated in the development of colorectal carcinoma (CRC), but CRC-associated changes of fecal microbiota and their potential for cancer...

Human faeces Metagenome

Endogenous retroviruses (ERVs) are transposable elements that cause host genome instability and usually play deleterious roles such as tumorigenesis. Recent advances also...