22 datasets found

The surge and dissemination of antimicrobial resistance (AMR) has grown to an issue of worldwide proportions. Key objectives in fighting this problem are preventing the spread...

Bacterial whole-genome sequencing (WGS) has the potential to identify reservoirs of multidrug-resistant organisms and transmission of these pathogens across healthcare networks....

Campylobacter study (Patho-NGen-Trace): Samples from sentinel surveillance scheme for human Campylobacteriosis in Oxfordshire. Isolates sequenced by Genoscreen (France) as part...

Whole genome sequencing of Enterococcus faecium, an opportunistic pathogen

We performed whole genome sequencing of two vanD5 typed-vancomycin-resistant E. faecium isolates from skin (SMVRE19) and feces (SMVRE20) of a patient, in Sapporo, Japan.

Enterococcus faecium WGS

Between January 2018 and April 2019, 100 non-replicate clinical isolates of VREfm originating from nosocomial outbreaks at eight different hospitals in Bavaria were investigated...

Vancomycin-resistant enterococci (VRE) have become a significant cause of healthcare-associated infections. We performed whole-genome sequencing (WGS) of stored VRE strains at...

Illumina sequencing of 132 Enterococcus faecium samples from a single Australian hospital.

Whole genome sequencing of wastewater isolates that do not fall into GenomeTrakr enteric or ESKAPE organisms.

Draft and complete genome sequences of foodborne bacterial pathogens collected for research purposes at the FDA's Center for Food Safety and Applied Nutrition.

Data in this project is grouped by category: <a href="https://data.argosdb.org/actinomycetes/">Actinomycetes</a>, <a...

The study describes a workflow to encourage the clinical utility and potential of next generation sequencing for the simultaneous detection of bacteria, fungi and antimicrobial...

Genome sequencing of bacteria from State collection of pathogenic microorganisms Obolensk. Collection includes bacteria, fungi, and cell-lines.

Complete genome sequences of organisms are the foundation of understanding biological functions. High-throughput parallel sequencing technologies such as Illumina make the...

Use selective bacterial culture to understand the identity, prevalence, persistence, and transmission of bacteria contaminating hospital intensive care unit surfaces in two...

Culturable bacterial community associated with marine sponge Aplysina

The use of NGS-based testing of the bacterial microbiota is often impeded by inconsistent or non-reproducible results, especially when applying different analysis pipelines and...

Whole genome sequencing of pure cultured microbial isolates of multiple species as part of the Food and Drug Administration surveillance effort of pathogens in medical products.

We determined the first complete nucleotide sequence and analysis conjugal plasmid pEF-D, an Enterococcus faecium JH5687 plasmid encoding VanD1-type D-Alanine-D-Lactate ligase.