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Clinical isolate sequencing
Sequencing of several clinical isolates of different species -
Recovery of nearly 8,000 uncultivated bacterial and archaeal genomes substant...
Challenges in cultivating microorganisms have limited the phylogenetic diversity of currently available microbial genomes. This is being addressed by advances in sequencing... -
Vet-LIRN-Other-SD
Veterinary Pathogens sequenced as part of the effort to Combat Antibiotic Resistant Bacteria -
Metagenomic survey and whole genome sequencing of antimicrobial resistant bac...
The purpose of this project is related to metagenomic survey and genomic epidemiology analysis of antimicrobial resistance bacteria (in particular, carbapenem and/or beta-lactam... -
Two weeks in the World 2020
The Two Weeks in the World research project has resulted in a dataset of 3100 clinically relevant bacterial genomes with pertaining metadata, collected from 59 diagnostic units... -
Antibacterial resistance in Lebanon
Sequences of Gram-negative pathogens of clinical samples in Lebanon and the MENA region -
Vet-LIRN-Other-NY
Veterinary Pathogens sequenced as part of the effort to Combat Antibiotic Resistant Bacteria -
CDC HAI-Seq Gram-negative bacteria
CDC Division of Healthcare Quality Promotion’s BioProject for whole genome sequence data of Gram-negative bacteria -
Pakistan and United States ICU sink/water transmission dynamics
Use selective bacterial culture to understand the identity, prevalence, persistence, and transmission of MDROs contaminating hospital intensive care unit sinks and water sources... -
ESKAPEE Pathogens from Foods
ESKAPEE pathogens isolated from foods. ESKAPEE is an acronym for Enterococcus faecium, Staphylococcus aureus, Klebsiella pneumoniae, Acinetobacter baumannii, Pseudomonas... -
Bacterial isolates from intensive care units
Whole genome sequencing of bacterial isolates over a 1-year period from a hospital's intensive care units. -
bacterial multiDAP
Escherichia coli and Pseudomonas simiae transcription factor binding sites mapped in 48 bacterial genomes -
CeMbio - The C. elegans microbiome resource: Bacterial genomes raw reads
The study of microbiomes by sequencing has revealed a plethora of correlations between microbial community composition and various life-history characteristics of the... -
Pathogens adhered to plastic litter collected in Zanzibar
Plastic litter was collected from Zanzibar, adhered bacteria were isolated, analyzed and whole genome sequenced -
ICUUKseq_GNB
The emergence and spread of antimicrobial resistance (AMR) poses a significant challenge to the safe delivery of modern medical care. Multidrug-resistant organisms (MDRO) are... -
NSPHL HAI WGS raw reads
Fastq files for HAI bacteria sequenced at the Nevada State Public Health Lab -
CVM NARMS Retail Seafood Isolates
Whole genome sequencing of foodborne pathogens isolated from retail seafood as part of the US Food and Drug Administration surveillance project for NARMS -
Pakistan and United States ICU transmission dynamics
Use selective bacterial culture to understand the identity, prevalence, persistence, and transmission of bacteria contaminating hospital intensive care unit surfaces in two... -
Hospital Microbiome Isolates
Antibiotic resistanct organisms isolated from hospital surfaces or patient stool or blood culture isolates
