23 datasets found

Bottom-up synthetic biology seeks to engineer a cell from molecular building blocks. Using DNA nanotechnology, building blocks, such as cytoskeletons, have been...

Structure-Based Model (SBM) simulations for the folding process of the FoxP1 protein using the SBMOpenMM library. Fifteen equilibrium replicas of 10 μs each were carried out at...

The data in this dataset represent simulations of supercooled water at the liquid-liquid critical point using the transferable molecular CVF model for water. The model is...

Cells sense and respond to mechanical forces through mechanotransduction, which regulates processes in health and disease. In single adhesive cells, mechanotransduction involves...

This repository contains 1) Source code to run CVF water simulations 2) Scripts to produce input files and run the simulations 3) The necessary data to reproduce the figures...

Scripts used in the experiments and analysis presented in the paper.

For more information, such as installation, requirements and user guide, please see the demoa manual. The development of this package was supported by “Deutsche...

Scripts used in the experiments and analysis presented in the paper.

For more information, such as installation, requirements and user guide, please see the demoa manual. The development of this package was supported by “Deutsche...

To fulfil their function, epithelial tissues need to sustain mechanical stresses and avoid rupture. While rupture is usually undesired, it is central to some developmental...

This repository contains all-atom molecular dynamics simulation data for four H3/CENP-A nucleosome systems, labeled by their PDB IDs: 1kx5, 3lz0, 6o1d, and 6o1e

Most proteins at the plasma membrane are not uniformly distributed but localize to dynamic domains of nanoscale dimensions. To investigate their functional relevance, there is a...

This dataset contains pre-treated data and a small analysis API to reproduce part of the Figure from the article: "Acoustic wave-induced stroboscopic optical mechanotyping of...

Files are seperated based on MD simulations and continuum electrostatics calculations. All the input/analysis files are present in corresponding directories/sub-directories. If...

figures, source data or code, manuscript for the publication

These are the data sets required to generate the figures in our paper 'Changes in ESCRT-III filament geometry drive membrane remodelling and fission in...

This repository contains data pertaining to the publication entitled "Curling of epithelial monolayers reveals coupling between active bending and tissue tension". This...

Data for manuscript preprint on bioRxiv (https://doi.org/10.1101/2021.08.29.458036) and accepted for publication at EMBO Journal (https://doi.org/10.15252/embj.202111041).

final data points, matplotlib scripts, and lammps input scripts used to generate the computational work including Fig.5, Fig.S5, Fig.S7 in this work. Final data points and plot...

Data and scripts for paper "Modelling Membrane Reshaping by Staged Polymerization of ESCRT-III Filaments". Including data points for figures in main and SI, and LAMMPS input file.