18 datasets found

Challenges in cultivating microorganisms have limited the phylogenetic diversity of currently available microbial genomes. This is being addressed by advances in sequencing...

We investigated the presence and prevalence of ESBL- and Carbapenemase-carrying bacterial species by swabbing "high touch" areas as deduced from literature (taps, door handles,...

Degradation of plastic

The purpose of this project is related to metagenomic survey and genomic epidemiology analysis of antimicrobial resistance bacteria (in particular, carbapenem and/or beta-lactam...

The Two Weeks in the World research project has resulted in a dataset of 3100 clinically relevant bacterial genomes with pertaining metadata, collected from 59 diagnostic units...

CDC Division of Healthcare Quality Promotion’s BioProject for whole genome sequence data of Gram-negative bacteria

Whole genome sequencing of bacterial isolates over a 1-year period from a hospital's intensive care units.

Collection of 3,087 bacterial metagenome-assembled genomes (MAGs) recovered from metagenomes available from the Sequence Read Archive. These MAGs comprise part of the data set...

This project is funded by the UK National Institute for Health Research to set up a full-fledged Global Health Research Unit (GHRU) through a grant awarded to the cGPS (Centre...

Whole genome sequencing of pure cultured microbial isolates of multiple species as part of the Food and Drug Administration surveillance effort of pathogens in medical products.

Whole genome sequencing of wastewater isolates that do not fall into GenomeTrakr enteric or ESKAPE organisms.

<b>FDA-ARGOS project update</b> <p>FDA-ARGOS database updates may help researchers rapidly validate diagnostic tests and use qualified genetic sequences to...

This project is funded by the UK National Institute for Health Research to set up a full-fledged Global Health Research Unit (GHRU) through a grant awarded to the cGPS (Centre...

A survey across centres in Africa into the main bacterial causes of bloodstream infections. These data are part of a pre-publication release. For information on the proper use...

The goal of this project is to identify carbapenemases and other beta-lactamases in clinical isolates with WGS and assess their mobilization potential . The results can support...

Prospective collection and sequencing of positive blood culture isolates in hospitalized adults in Cambodia

The level of antibiotic resistance in neonatal infections and its impact on mortality in low-middle income countries (LMICs) is unacceptably high. The study, entitled the Burden...

Whole genome sequencing of bacterial pathogens is combined with machine learning and data mining of the electronic medical record to enhance outbreak detection in hospitals and...