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Knight_extraction_test
One plate of samples was extracted using several different extraction tools (new, faster) for comparison with the existing pipeline -
Degraded mangrove habitat site of Indian Sundarbans soil microbiome Metagenome
This study was initiated to find out the absolute abundance of presence of different bacterial community in these degraded mangrove habitat sites soil of Indian Sundarbans. It... -
Eukaryotic biodiversity in surface waters of the eastern North Pacific
An uncrewed surface vessel, USV Surveyor, and an automated eDNA sample collection device, the Environmental Sample Processor, were used to obtain eDNA samples autonomously over... -
Potential for habitat generalism among microbes at the aquatic-terrestrial in...
16S amplicon sequencing looking at habitat switching -
Novel halophilic and halotolerant producers of antimicrobial compounds from v...
We describe the results of three different approaches to the search for novel antimicrobial compounds in halophilic and halotolerant microorganisms inhabiting three different... -
Metagenomes of the Western English Channel
Virus numbers are staggering - they are by far the most abundant and diverse organisms on Earth. Of these, the vast majority are viruses that infect and kill bacteria (known as... -
aquatic metagenome Raw sequence reads
Meromictic lake Svetloe (Arkhangelsk region, Russia), tag sequencing on bacterial 16S rRNA V3-V4 regions -
Evaluating the effects of translocation and host characteristics on skin asso...
The factors shaping the composition and dynamics of microbiomes associated to aquatic organisms, especially regarding skin microbiomes have been understudied despite the... -
Microbiome depletion and recovery in the sea anemone, Aiptasia, following ant...
This study exposed the sea anemone model Exaiptasia diaphana to two different antibiotic solutions, and tracked host physiology parameters and 16s community composition to... -
NYC aquatic vertebrate eDNA time series 2016
Profiling fish NYC's aquatic vertebrate using eDNA profiling -
Bacterioplankton community structure from pacific southern ocean
The objective of this study was to test the effect of geographic distance and environmental parameters on prokaryotic community structure in the Southern Ocean (SO). We... -
Oral and Cloacal Microbiome of wild sea turtles
Bacteria associated with the oral cavity and cloaca of Kemp's ridley and green sea turtles from Gulf of Mexico (Florida). Illumina sequencing of the 16s rRNA gene. -
Metagenomic analysis on symbiotic bacteria in ascidians related to vanadium a...
(Experiment 1 and 2) We assessed the efficiency of the methodology on the intestinal content of a vanadium-rich ascidian, A. ahodori. (Experiment 3) We compared PCR-based... -
Temporal dynamics of Atlantic salmon skin and gill mucosal microbiomes in FW ...
As the global population continues to increase, so to does the need for a sufficient and sustainable source of protein for human consumption. In line with this need, aquaculture... -
Inclusion of digestible carbohydrates in combination with a total plant-based...
These 16S sequencing data are from the project to study the impact of a 100% plant-based diet with dietary carbohydrates on the microbiota and metabolism of rainbow trout. The... -
Microbial diversity in arctic freshwaters is structured by inoculation of mic...
A 12-year sample archive of DNA from Alaskan arctic tundra ecosystems are available to the Earth Microbiome Project for comparison of microbial diversity across a range of... -
Benthic protist community in Mediterranean sediment samples Raw sequence reads
This study had the aims of (i) identifying the single-celled protist assemblages in the superficial sediments of Italian Mediterranean regional seas, (ii) relating their... -
QMRA of beach water by Nanopore sequencing-based viability-metagenomics absol...
Overall, this study aims to achieve absolute quantification for live microbial cells in beach water. To achieve this, propidium monoazide (PMA) dye was used at the sample... -
Assessing Differences in 16S rRNA Gene Sequencing Due to Preservation Method ...
Assessing differences due to preservation methods and extraction kit used on downstream 16S rRNA gene survey results. Variations in that were detected tended to be smaller than... -
Cryptic diversity shapes coral physiology and response to thermal challenge
This submission includes the metabarcoding sequencing data associated with identifying Symbiodiniaceae (ITS2) and bacteria (16S) associated with cryptic lineages of Siderastrea...