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Effects on the liver transcriptome in Baltic salmon: contributions of contami...
Salmon liver samples were collected from three areas of the Baltic Sea during years 2007 and 2008. Individuals with wild or hachery-reared origin were compared within the same... -
Interferon Alpha (IFNa) Induction and Knockout Analysis of ISGs in Atlantic S...
To investigate differentially expressed genes (DEGs) upon challenge with infectious salmon anemia virus (ISAV) or infectious pancreatic necrosis virus (IPNV) after IFNa... -
Comparative analysis of genome-scale, base-resolution DNA methylation profile...
We mapped DNA methylation in 580 animal species (535 vertebrates, 45 invertebrates), resulting in 2443 genome-scale, base-resolution DNA methylation profiles of primary tissue... -
NutrEpi Work Package 2 - RNA-Seq (raw, unaligned)
Liver samples of Atlantic salmon from four different spawning seasons (regular, early, late, and off-season) were collected at the larval stage for RNA-seq. -
DNA methylation dynamics in Atlantic salmon (Salmo salar) challenged with hig...
In this study, we employed Multiplex Bisulfite Sequencing (MBS) to measure CpG methylation within a ~500 bp region around the transcription start of six thermal/hypoxia... -
A sample of smoked salmon, spiked with a variety of microbes has been sent to...
A sample of smoked salmon, spiked with a variety of microbes has been sent to a number of labs. At APHA, separate RNA and DNA extractions were performed and each libraries made... -
Impact of short photoperiod length on smoltification (RNAseq)
This experiment was set up to evaluate the effect of the duration of a short photoperiod (winter-like conditions, 8 hours light, 14 hours dark) on the smolt transcriptome in... -
Total RNA sequenced from Atlantic salmon with cardiomyopathy syndrome (CMS)
Total RNA was sequenced from Atlantic salmon with cardiomyopathy syndrome (CMS) in order to look for possible infectious agent(s). -
ROS Work Package 2 - RNA-Seq bone (raw, unaligned)
We investigated the effects of photoperiod on redox system of Atlantic salmon from March to September. 45 bone samples were submitted. -
Transcriptomic Responses Mediating Family-Based Differences in Upper Thermal ...
Based on the results of an incremental thermal maximum (ITmax) experiment, this study examined the hepatic transcriptomic responses of Atlantic salmon from the top four and... -
SNP identification in Atlantic salmon using RAD sequencing
Dense single nucleotide polymorphism (SNP) genotyping arrays provide extensive information on polymorphic variation across the genome of species of interest. This can be applied... -
Transcriptome Analysis of mRNA and miRNA in Adherent Intestinal Cells of Atla...
Head kidney (HK) and distal intestine (DI) from Atlantic salmon (average 550g) were collected. Immune cells from DI and HK were extracted and grown at 12°C in Leibovitz’s L-15... -
AGD resistant and susceptible Atlantic salmon RNA-seq
RNA sequencing of AGD infected Atlantic salmon gill and head kidney obtained from fish predicted to be resistant or susceptible -
Multitissue transcriptomic profiling during onset of salmon maturation
We sequenced mRNA from four biological replicates of each tissue before (T1) and after the onset of maturation (T2, T3, T4). A total of 3.2 billion paired-end reads were mapped... -
Atlantic salmon RAD-seq raw sequence reads
Identification of discrete and unique assemblages of individuals or populations is central to the management of exploited species. Advances in population genomics provide new... -
NutrEpi Work Package 1 Liver - RNA-Seq (raw, unaligned)
Three groups of Atlantic salmon were fed with graded levels of micronutrient package. 18 male liver samples were collected at the final harvest stage for RNA-seq. -
SalmoSim - Biomos preobiotic study
Use of salmon gut model system to understand impact of prebiotic on host-associated microbial communities. -
Immune response of Atlantic salmon against to Piscirickettsia salmonis
Piscirickettsiosis is the main bacterial disease affecting the Chilean salmon farming industry and is responsible for high economic losses. The development of effective... -
RNA-seq of Atlantic salmon olfactory rosette and gill
A comparitive study to highlight differences and similarities of the basal transcriptome of the olfactory rosette and the gill of Atlantic salmon, with some emphasis on immune... -
Assembly of a male Atlantic salmon using long reads
We sequenced a male Atlantic salmon using the PromethION instrument from Oxford Nanopore Technologies, and polished the assembly using Illumina reads.