Interferon Alpha (IFNa) Induction and Knockout Analysis of ISGs in Atlantic Salmon SHK-1 Cells Challenged with ISAV and IPNV

To investigate differentially expressed genes (DEGs) upon challenge with infectious salmon anemia virus (ISAV) or infectious pancreatic necrosis virus (IPNV) after IFNa treatment, in comparison to untreated cells. To examine the differentially expressed genes (DEGs) in knock-out (KO) cells with specific IFN receptors knockout, following IFNa treatment and infection with ISAV or IPNV. The expression profiles of these KO cells were compared with non-KO cells also treated with IFNa and infected with ISAV or IPNV.

Identifier
Source https://data.blue-cloud.org/search-details?step=~012D43ABAADF6AC61D128D8DF226618A3E3098F796B
Metadata Access https://data.blue-cloud.org/api/collections/D43ABAADF6AC61D128D8DF226618A3E3098F796B
Provenance
Instrument Illumina NovaSeq 6000; ILLUMINA
Publisher Blue-Cloud Data Discovery & Access service; ELIXIR-ENA
Contributor European Bioinformatics Institute;PhD fellow;Norwegian University of Life science
Publication Year 2024
OpenAccess true
Contact blue-cloud-support(at)maris.nl
Representation
Discipline Marine Science