56 datasets found

Comparison of different sample types using different primers and platforms

Development and validation of phylum specific 16S primers for use with next generation sequencing for analysis of water quality

Marine sponges (phylum Porifera) are a diverse, phylogenetically deep-branching clade known for forming intimate partnerships with complex communities of microorganisms. To...

This project aimed to conduct an initial microbial community survey to assess prokaryotic diversity and potential seasonal patterns in surface waters of the Caloosahatchee River...

The objective of this project was to evaluate the microbial community structure, diversity and environmental drivers of the Great Whale River, including some of its tributaries...

In this study we map microbial distributions within a small, natural watershed in order to examine source-sink dynamics of symbiotic microbes at the landscape scale, among...

Mifish Metabarcoding from 1.5L water for comparing two extraction methods

Several fungi-specific primers target the 18S rRNA gene sequence, one of the prominent markers for fungal classification. The design of most primers goes back to the last...

Presence of pathogenic bacterial pollution in coastal marine environments around the world raises environmental and public health concerns for many reasons, among them due to...

Rivers are important transport systems for nutrients and organic material and thus influence biogeochemical cycles and food web structures. Microorganismal biodiversity is an...

Microbial communities enriched from freshwater, wastewater, and seawater which are able to induce CaCO3 and CaSO4 precipitation

A 12-year sample archive of DNA from Alaskan arctic tundra ecosystems are available to the Earth Microbiome Project for comparison of microbial diversity across a range of...

Rain events increase Tijuana river flow to levels that the international water treatment plant in the Mexico-US border can not process. Therefore, rain runoff and sewage...

We are interested in whether the host fish microbiome is important for host adaptation to alternate osmotic niches. Toward this goal, we seek to describe the patterns of...

Although Brazil is well known for the great biodiversity within its flora and fauna, the microbial diversity has been poorly characterized. The geographic formation of Rio de...

Investigating the shift in microbial community composition associated with minberal particles in different environment (soil, freshwater and marine environment) of the GBR.

16S and 18S rRNA gene sequences associated with marine depth profiles and lateral transects from various fiords (glaciated and non glaciated) in Jones Sound and area.

Monitoring natural ecological communities is often time-, labour-, and money-consuming work. DNAs that are derived from organisms and remain in natural environments...

Long-read metabarcoding of the eukaryotic nuclear SSU-rRNA to phylogenetically and taxonomically resolve environmental diversity of the order Vampyrellida (Rhizaria).

The data in this project is part of CIRCLES: Controlling mIcRobiomes CircuLations for bEtter food Systems. CIRCLES is a European Union Horizon 2020 research and innovation...