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Seawater carbonate chemistry and body size of the keystone sea urchin Strongy...
A rapidly growing body of literature documents the potential negative effects of CO2-driven ocean acidification (OA) on marine organisms. However, nearly all of this work has... -
Experimental ocean acidification alters the allocation of metabolic energy
Energy is required to maintain physiological homeostasis in response to environmental change. Although responses to environmental stressors frequently are assumed to involve... -
Strongylocentrotus purpuratus isolate:Spur 01 Genome sequencing and assembly
The Strongylocentrotus purpuratus genome has been sequenced using a combination of Sanger (~8X coverage), SOLiD (~18X), Illumina (~40x), and PacBio (~11X) by the Human Genome... -
Single cell RNA-seq in the sea urchin embryo show marked cell-type specificit...
Overall, we conclude that single cell RNA-seq analysis in this embryo is revealing of the cell types present during development, of the changes in the gene regulatory network... -
Characterization and expression analysis of miRNAs in the larvae of sea urchi...
These results develop a relatively large number of miRNAs transcriptome resources and will provide a foundation for further analyses on the function and molecular mechanisms... -
Strongylocentrotus purpuratus Genome sequencing and assembly
The full genomic characterization of the Sp185/333 gene family. The gene family is not represented correctly in the current genome assembly due its repetitive nature.... -
Strongylocentrotus purpuratus developmental transcriptomes
Transcriptomes of sea urchin (Strongylocentrotus purpuratus) embryos, larvae, and adult tissues were profiled using RNA-seq technology. -
The sea urchin larval response to immune challenge with Vibrio diazotrophicus
Seawater exposure to the gram negative marine bacterium Vibrio diazotrophicus induces a robust cellular response in sea urchin larvae that includes the migration of pigment... -
Genome-wide Targets of Ets1, Alx1 and MAPK pathway in Strongylocentrotus purp...
Total RNA was extracted at 28-30 hours post-fertilization (early gastrula stage) from Ets1 morphant embryos, Alx1 morphant embryos, embryos treated continuously with UO126 from... -
The evolution of DNA methylation inheritance and programming in animals
DNA methylation has been found throughout animal kingdom, but it is still unclear whether this epigenetic mechanism affects the evolution of genomic elements in animals. Here,... -
Chromatin accessibility profiling identifies cis-regulatory modules in an ear...
We used DNase-seq and ATAC-seq to identify a set of putative CRMs regulating skeletogenic gene expression during sea urchin embryogenesis. These CRMs, identified by differential... -
Genome-wide identification of binding sites and gene targets of Alx1, a pivot...
ChIP-seq provides a genome-wide view of the binding sites of Alx1, a pivotal transcription factor in a gene regulatory network that controls skeletogenesis in sea urchins and... -
Seawater carbonate chemistry and respiration rate of Strongylocentrotus purpu...
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent... -
Seawater carbonate chemistry and filtering rate of Strongylocentrotus purpura...
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent... -
Seawater carbonate chemistry and size of Strongylocentrotus purpuratus during...
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent... -
Seawater carbonate chemistry, sample density and Strongylocentrotus purpuratu...
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent... -
Seawater carbonate chemistry and Strongylocentrotus purpuratus body length an...
Extensive use of fossil fuels is leading to increasing CO2 concentrations in the atmosphere and causes changes in the carbonate chemistry of the oceans which represents a major... -
Seawater carbonate chemistry, sample density and Strongylocentrotus purpuratu...
Anthropogenic CO2 emissions are acidifying the world's oceans. A growing body of evidence is showing that ocean acidification impacts growth and developmental rates of marine... -
DNA Zoo
The DNA Zoo is a consortium focused on facilitating conservation efforts through the rapid generation and release of high-quality genomics resources. -
PRO-seq, ATAC-seq, and Pol II ChIP-seq in 20 hour sea urchin embryos (ChIP-seq)
PRO-seq, ATAC-seq, and Pol II ChIP-seq signals are used to predict active developmental enhancers. Overall design: Machine learning models are trained and tested wit the...
