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List and processing details of the selected samples of the study for metabarc...
This dataset has no description
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List, processing details and taxonomic counts of planktonic foraminifera for ...
This dataset has no description
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Net sampling to assess the cephalopod biodiversity of Cabo Verde
Net catches of cephalopods were obtained during the cruises POS320/2 (March 2005), MSM49 (November/December 2015) and WH383 (March/April 2015) off Cabo Verde at a total of 18... -
In situ video observations to assess the cephalopod biodiversity of Cabo Verde
Pelagic video transects with the Pelagic In-Situ Observation System (PELAGIOS, (Hoving et al., 2019a)) were conducted during the cruises MSM49 (Christiansen et al., 2016)... -
Plant diversity in sedimentary DNA obtained from high-latitude (Siberia) and ...
Compilation of environmental data for the 262 investigated localities, which include additional intra-lake localities taken within three large lakes namely: 16-KP-01-L02 (9... -
Taxonomic assignment of the ISU for the 334 PCR products (Table S3)
This dataset has no description
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Planktonic foraminifera eDNA signature deposited on the seafloor remains pres...
Environmental DNA (eDNA) metabarcoding of marine sediments has revealed large amounts of sequences assigned to planktonic taxa. How this planktonic eDNA is delivered on the... -
Taxonomic or trait assignation of environmental sequences in regions with a p...
Supplementary data of the manuscript --- Abstract ------ We present a new version of a barcoding reference library dedicated to diatoms, Diat.barcode v12, with newly published... -
Replication Data for: Issues of under-amplification in quantitative DNA metab...
This dataset contains raw metabarcoding sequences and final filtered data used for analysing the quantitative accuracy of dietary metabarcoding by comparing relative read... -
Replication Data for: Novel frontier in wildlife monitoring: identification o...
Small rodents are prevalent and functionally important across the world’s biomes, making their monitoring salient for ecosystem management, conservation, forestry and... -
Reads and pairwise distances from 10 samples of diatoms in Geneva lake
This dataset contains 55 hdf5 files related to 10 samples (one per month) of benthic diatoms collected in Geneva lake at monthly interval in the same location (close to UMR... -
METABARFOOD - Description of the sequences used in mock communities
This report gives informations about reference sequences used for the analysis of mock communities. -
Diatom endemism: an assessment in high-altitude alpine lakes covering a large...
Fasq files, metadata, and communities datatables. -
METABARFOOD - Results on mock communities, choice of the bioinformatics solution
Results obtained from mock communities -
Viral metagenomic and fungal ITS metabarcoding data from complex pools of pla...
Using cross-disciplinary approaches to characterize the plant core microbiome, we assessed the diversity and composition of leaf-associated fungal and viral communities from... -
Test dataset for assessment FROGS 16S amplicon methodology
Grinder (v.0.5.3) (Angly, et al., 2012) was used to simulate the PCR amplification of fulllength (V3V4 and V4) sequences from reference databases. We generated 25 sets of... -
Hatching-data_Gautier-et-al_FIM
Hatching rates of Globodera pallida in native and recolonized soils (A, D, F and J) for each replicate in each modality (dose 1, dose 2 and control). -
Metabarcoding datasets and bioinformatic scripts for the LEARN_BIOCONTROL pro...
Metabarcoding datasets describing the foliar mycobiome of grapevine (Vitis vinifera L.) leaves collected in the LEARN-BIOCONTROL project. Bioinformatic scripts used to analyze... -
Test dataset for assessment FROGS ITS methodology
Our objective was to create datasets allowing, among other things, to test methods and tools to process data from Fungi metabarcoding sequencing. Consequently, we have... -
Oomycete diversity determined via metabarcoding in two embayments in the Orkn...
Water sampling was carried out weekly between April and October 2016. Water samples were taken from two shallow sites (less than 5 km apart) in the Orkneys. Sampling was done...
