163 datasets found

Transcriptomic alterations associated with the dysfunction of Pro1, a causal gene of female sterility, were investigated.

explore the mechanism of 9-phenanthrol against Magnaporthe oryzae by transcriptome

Nim1 temperature sensitive mutant of Magnaporthe oryzae (Guy11 background) was subjected to UV mutagenesis and mutants selected that reverted to wild-type. Genomic DNA was...

We sequenced 24 rice-infecting Magnaporthe oryzae isolates collected from countries around the world to make a pangenome for this lineage using ONT and Illumina sequencing...

The genomes of plant pathogens are highly variable and plastic. Pathogen gene repertoires change quickly with the plant environment, which results in a rapid loss of plant...

Magnaporthe oryzae is the causal agent of rice blast. Camptothecin has a strong anti-fungal activity against Magnaporthe oryzae, but the mode of action needs further...

To reveal how MoSrp1 affects mRNA splicing, we compared the transcriptomes between strains srp1-ko1 and P131, and analyzed defects in mRNA splicing resulted from the loss of...

Identification of the difference of the pre-mRNA in the wild type and mutant strain Overall design: wild type (WT) and mutant strain were generated by deep sequencing

Undergraduate Research Experiences in Applied Bioinformatics

We report that suppression of polycomb-mediated H3K27me3 epigenetically de-repressed the genome-wide expression of effectomes in the vegetative growth stage. Tthe chromatin...

Gene editing in M. oryzae was performed using purified Cas9 pre-complexed to RNA guides to form ribonucleoproteins (RNPs). When used in combination with oligonucleotide or...

To understand gene expression divergence through evolutionary processes in filamentous fungi

We sequenced isolates of the blast fungus Pyricularia oryzae from rice plants collected in Yule (Yunnan Province, China). We used these data to perform genome-wide association...

Secondary metabolite (SM) clusters are rapidly evolving regions in the fungal genome. However, the driving force and genetic mechanism of SM cluster diversification in the...

Magnaporthe oryzae is a notorious fungus most well known to cause blast disease on rice and wheat with devastating effect on grain yield. Its host range includes other cereal...

ChIP-seq and RNA-seq analysis of Pyricularia oryzae using knockout mutants of genes encoding histone lysine methyltransferase.

Rice blast is a major disease of rice, caused by the fungus Magnaporthe oryzae. Different host environments can lead to differences in the genome of M. oryzae, which may affect...

Isolation of the Magnaporthe oryzae effector gene, AVR-Pias recognized by the rice resistance gene Pias using association analysis.

Genome sequencing and assembly of a Zambian wheat blast strain ZM2-1

In order to understand the mechanisms of Drought induced susceptibility (DIS) we’ve conducted a dual RNAseq experiment on rice infected tissues by Magnaporthe oryzae. At 4 days...