Genomic signatures of climate-driven (mal)adaptation in an iconic conifer, the English yew (Taxus baccata L.)

Dataset

DOI

This dataset consists of a Variant Call Format (VCF) file containing genomic data from Taxus baccata (European yew). The dataset includes 11,374 single nucleotide polymorphisms (SNPs) identified across 490 individual trees sampled from across the European range of the species. This dataset was used to carry out a study investigating patterns of local adaptation and to assessing the risk of climate maladaptation using genomic offset approaches.

Identifier
DOI	https://doi.org/10.57745/JJ0ZEI
Metadata Access	https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.57745/JJ0ZEI

Provenance
Creator	Francisco Thomas ; González-Martínez Santiago C. ; Mayol Maria ; Vajana Elia ; Riba Miquel ; Westergren Marjana ; Cavers Stephen ; Pinosio Sara ; Bagnoli Francesca ; Marchi Maurizio ; Aravanopoulos Filippos A. ; Farsakoglou Anna-Maria ; Scotti Ivan ; Fady Bruno ; Vendramin Giovanni G. ; Archambeau Juliette ; Piotti Andrea
Publisher	Recherche Data Gouv
Contributor	Francisco Thomas; González-Martínez Santiago C.; National research institute for agriculture food and environment; Institute of Biosciences and BioResources, National Research Council; Slovenian Forestry Institute; Centro de Investigación Ecológica y Aplicaciones Forestales; Universitat Autònoma Barcelona; Laboratory of Forest Genetics, Faculty of Agriculture, Forestry and Natural Environment; Entrepôt Recherche Data Gouv
Publication Year	2025
Funding Reference	H2020 GENTREE (grant agreement No. 676876) ; TAXUS (CGL2007-63107/BOS) ; ADAPCON (CGL2011‐30182‐C02‐02) ; READAPT (PID2020-112738GB-I00) ; Slovenian Research Agency (research core funding no. P4-0107) ; EU H2020 FORGENIUS (grant agreement No. 862221)
Rights	etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess	true
Contact	Francisco Thomas (INRAE); González-Martínez Santiago C. (INRAE)

Representation
Resource Type	Dataset
Format	text/x-vcard; text/tab-separated-values
Size	162970993; 22191
Version	1.0
Discipline	['Other']; ['Taxus baccata']; ['Climate change']; ['Genomic offset']; ['Genotype environment association']; ['Local adaptation']