Triggered contraction of self-assembled micron-scale DNA nanotube rings [Research Data]

DOI

Contractile rings formed from cytoskeletal filaments mediate the division of cells. Ring formation is induced by specific crosslinkers, while contraction is typically associated with motor protein activity. Here, we engineer DNA nanotubes as mimics of cytoskeletal filaments and a synthetic crosslinker based on a peptide-functionalized starPEG construct. The crosslinker induces bundling of ten to hundred individual DNA nanotubes. Importantly, the DNA nanotube bundles curve into closed micron-scale rings in a one-pot self-assembly process yielding several thousand rings per microliter. Coarse-grained molecular dynamics simulations reproduce detailed architectural properties of the DNA rings as observed by electron microscopy. Furthermore, theory and simulations predict DNA ring contraction – without motor proteins – upon increasing attraction or decreasing bending rigidity of the DNA nanotubes, yielding mechanistic insights into the parameter space relevant for efficient nanotube sliding. We experimentally realize a variation of these parameters by addition of molecular crowders or temperature increase, respectively. In agreement between simulation and experiment, we obtain ring contraction to less than half of the initial ring diameter. DNA-based contractile rings could be a future element of an artificial division machinery in synthetic cells or of contractile muscle-like materials.

Identifier
DOI https://doi.org/10.11588/data/ADYUNN
Metadata Access https://heidata.uni-heidelberg.de/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.11588/data/ADYUNN
Provenance
Creator Illig, Maja (ORCID: 0000-0002-3484-256X); Jahnke, Kevin; Weise, Lukas P.; Scheffold, Marlene; Mersdorf, Ulrike; Drechsler, Hauke; Zhang, Yixin; Diez, Stefan; Kierfeld, Jan; Göpfrich, Kerstin ORCID logo
Publisher heiDATA
Contributor Illig, Maja
Publication Year 2024
Funding Reference Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy via the Excellence Cluster 3D Matter Made to Order EXC-2082/1 -- 390761711 ; Hector Fellow Academy ; Carl Zeiss Foundation ; Joachim Herz Foundation ; Alexander von Humboldt Foundation ; Max Planck Society
Rights CC BY 4.0; info:eu-repo/semantics/openAccess; http://creativecommons.org/licenses/by/4.0
OpenAccess true
Contact Illig, Maja (Center for Molecular Biology of Heidelberg University (ZMBH), Im Neuenheimer Feld 329, 69120 Heidelberg, Germany; Max Planck Institute for Medical Research, Biophysical Engineering Group, Jahnstraße 29, 69120 Heidelberg, Germany)
Representation
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Version 1.0
Discipline Biology; Chemistry; Life Sciences; Medicine; Natural Sciences; Physics