Data synchronizator of Where2test pipeline

DOI

Software to synchonise the data between various data sources and casus database server. For Unix users please use MigrateWhere2test_2.0Unix.zip and for WIndows users please use MigrateWhere2test_2.0Win.zip. In order to use the scripts, please use the following instructions:

Windows

  1. Create the postgreq sql database and set the port 5432.

  2. Apply w2testRegion.sql to the Postgresql database. It creates the schema of the database.

  3. Create folder C:\Workspaces and unzip the unix file. 

  4. Create folder in workspaces, com.com.casus.env.where2test.migration\COM_CASUS_WHERE2TEST_MIGRATION and then unzip the source file inside COM_CASUS_WHERE2TEST_MIGRATION. 

  5. Install requirement.txt. We use some python scripts for downloading and cleaning the data

  6. Set the memory on the file MigrateWhere2test_run.bat minimal to 13 GB

  7. Set run Develop and run the .bat file on the folder MigrateWhere2test_2.0Unix to run in localhost.

Unix

  1. Create PostgreSQL with port 32771.

  2. Apply w2testRegion.sql to the Postgresql database. It creates the schema of the database.

  3. Create folder /home/wildan/Workspaces and unzip the unix file. 

  4. Open the file MigrateWhere2test/MigrateWhere2test_run.sh and change the mode "Default" by "Production"

  5. Create folder in workspaces, com.com.casus.env.where2test.migration.unix/COM_CASUS_WHERE2TEST_MIGRATION and then unzip the source file inside COM_CASUS_WHERE2TEST_MIGRATION. 

  6. Install requirement.txt. We use some python scripts for downloading and cleaning the data

  7. Set the memory on the file MigrateWhere2test_run.sh minimal to 13 GB

  8. run the MigrateWhere2test_run.sh in the "Production" mode.

 

Identifier
DOI https://doi.org/10.14278/rodare.1946
Related Identifier IsIdenticalTo https://www.hzdr.de/publications/Publ-34430
Related Identifier IsPartOf https://doi.org/10.14278/rodare.1500
Related Identifier IsPartOf https://rodare.hzdr.de/communities/health
Related Identifier IsPartOf https://rodare.hzdr.de/communities/hzdr
Related Identifier IsPartOf https://rodare.hzdr.de/communities/rodare
Metadata Access https://rodare.hzdr.de/oai2d?verb=GetRecord&metadataPrefix=oai_datacite&identifier=oai:rodare.hzdr.de:1946
Provenance
Creator Abdussalam, Wildan ORCID logo
Publisher Rodare
Publication Year 2022
Rights Creative Commons Attribution 4.0 International; Open Access; https://creativecommons.org/licenses/by/4.0/legalcode; info:eu-repo/semantics/openAccess
OpenAccess true
Contact https://rodare.hzdr.de/support
Representation
Language English
Resource Type Software
Version 2.0.0
Discipline Life Sciences; Natural Sciences; Engineering Sciences