CAZome annotations

DOI

All the predicted proteins from the X. index, Mesodorylaimus sp. YZB2_4, Trichinella spiralis, Trichinella nelsoni, Trichuris muris, and Trichuris trichiura genomes were compared with entries in the CAZy database (Drula et al., 2022). A homemade pipeline combining the BlastP (https://blast.ncbi.nlm.nih.gov/Blast.cgi) and HMMER3 (http://hmmer.janelia.org/) tools was used to compare protein models with the sequences of the CAZy modules. Proteins with E-values less than 0.1 were further screened by a combination of BlastP searches against libraries generated from the sequences of the catalytic and non-catalytic modules. HMMER3 was used to search against a collection of custom Hidden Markov Model (HMM) profiles constructed for each CAZy family. Expert curators then performed manual inspection to resolve borderline cases.

Identifier
DOI https://doi.org/10.57745/SMJCUN
Metadata Access https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.57745/SMJCUN
Provenance
Creator Drula, Elodie ORCID logo; Etienne GJ Danchin ORCID logo
Publisher Recherche Data Gouv
Contributor Etienne GJ Danchin
Publication Year 2026
Funding Reference Agence nationale de la recherche ANR-13-JSV7-0006
Rights etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess true
Contact Etienne GJ Danchin (INRAE)
Representation
Resource Type Dataset
Format text/html; text/plain
Size 219017; 25108; 15811; 8497; 12326; 12092; 32979
Version 1.0
Discipline Agriculture, Forestry, Horticulture; Life Sciences