A technical comparison of spatial transcriptomics platforms across six cancer types - XeniumMT & Xenium5K

DOI

This repository contains Xenium spatial transcriptomics data with multimodal cell segmentation. The data were generated using the Multi-Tissue (XeniumMT) and Human Prime 5K (Xenium5K) gene panels and were used in the spatial platforms comparison study by Cervilla et al. (2025). If you are interested in the same samples profiled with other spatial transcriptomics technologies, see also:

Visium v1, Visium v2/CytAssist, and Visium HD: https://doi.org/10.5281/zenodo.17999961 Xenium and CosMx: https://doi.org/10.5281/zenodo.17986017

Identifier
DOI https://doi.org/10.34810/DATA3062
Related Identifier IsCitedBy https://doi.org/10.1186/s13059-026-03937-y
Metadata Access https://dataverse.csuc.cat/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.34810/DATA3062
Provenance
Creator Cervilla, Sergi ORCID logo; Grases Mendoza, Daniela ORCID logo; Porta-Pardo, Eduard ORCID logo
Publisher CORA.Repositori de Dades de Recerca
Contributor Porta-Pardo, Eduard
Publication Year 2026
Funding Reference https://ror.org/003x0zc53 LABAE20038PORT
Rights CC BY 4.0; info:eu-repo/semantics/openAccess; http://creativecommons.org/licenses/by/4.0
OpenAccess true
Contact Porta-Pardo, Eduard (Institut de Recerca contra la Leucèmia Josep Carreras (IJC))
Representation
Resource Type Experimental data; Dataset
Format text/html; application/octet-stream; application/x-hdf5; application/json; image/tiff; text/plain
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Version 1.0
Discipline Life Sciences; Medicine