Data for: Intermittent flow paths in biofilms grown in a microfluidic channel

DOI

Content: This dataset includes images of 10 different biofilm growth experiments to observe intermittent flow paths in a microfluidic channel. All images taken by optical microscopy per five minutes. The experiments took in avarage 4-5 days. The published data is the raw images of the experiments. The images names were related to the timestamps as [YYYY_MM_DD_hh-mm-ss].

    All further referenced files are compressed into the folder Files.tar.gz. After extracting, all files are accessible.

This dataset contains in detail:

    The captured images of the experiments used for post processing to evaluate the frequency of the intermittent flow paths.

 

E2_images.tar.gz contains the images of the experiment with an average starting nutrient broth velocity of 0,23 mm/s in the narrow channel.
E3_1_images.tar.gz contains the images of the first experiment with an average starting nutrient broth velocity of 0,8 mm/s in the narrow channel.
E3_2_images.tar.gz contains the images of the second experiment with an average starting nutrient broth velocity of 0,8 mm/s in the narrow channel.
E4_1_images.tar.gz contains the images of the first experiment with an average starting nutrient broth velocity of 1,6 mm/s in the narrow channel.
E4_2_images.tar.gz contains the images of the second experiment with an average starting nutrient broth velocity of 1,6 mm/s in the narrow channel.
E5_images.tar.gz contains the images of the experiment with an average starting nutrient broth velocity of 0,8 mm/s in the wide channel.

 

    The captured images used to qualify the biofilm growth and the occurrence of intermitting flow paths with higher and lower velocities compared to the experiments where intermittency was clearly visible.

 

E1_images.tar.gz contains the images of the experiment with an average starting nutrient broth velocity of 0,114 mm/s in the narrow channel.
E1.2_images.tar.gz contains the images of the experiment with an average starting nutrient broth velocity of 0,114 mm/s in the narrow (repetititon).
E1.3_images.tar.gz contains the images of the experiment with an average starting nutrient broth velocity of 0,114 mm/s with higher nutrient concentration in the narrow channel.
E6_1images.tar.gz contains the images of the first experiment with an average starting nutrient broth velocity of 1,6 mm/s in the wide channel.
E6_2_images.tar.gz contains the images of the second experiment with an average starting nutrient broth velocity of 1,6 mm/s in the wide channel.
E7_images.tar.gz contains the images of the experiment with an average starting nutrient broth velocity of 0,8 mm/s in narrow channel with pore bodies.
Identifier
DOI https://doi.org/10.18419/DARUS-4314
Related Identifier IsCitedBy https://doi.org/10.1016/j.advwatres.2025.105018
Metadata Access https://darus.uni-stuttgart.de/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.18419/DARUS-4314
Provenance
Creator Bozkurt, Kerem ORCID logo; Lohrmann, Christoph ORCID logo; Weinhardt, Felix ORCID logo; Hanke, Daniel; Hopp, Raphael; Gerlach, Robin ORCID logo; Holm, Christian (ORCID: 0000-0003-2739-310X); Class, Holger ORCID logo
Publisher DaRUS
Contributor Bozkurt, Kerem; LH2_RDM
Publication Year 2025
Funding Reference DFG 327154368 - SFB 1313
Rights CC BY 4.0; info:eu-repo/semantics/openAccess; http://creativecommons.org/licenses/by/4.0
OpenAccess true
Contact Bozkurt, Kerem (University of Stuttgart); LH2_RDM (University of Stuttgart)
Representation
Resource Type Dataset
Format application/x-gzip; application/gzip
Size 15666760; 18956300; 1956131923; 3962796568; 3978092478; 3128050448; 1583933151; 3543023071; 83282516; 1757491154; 2248720561; 2905242687; 25561847382
Version 1.0
Discipline Construction Engineering and Architecture; Earth and Environmental Science; Engineering; Engineering Sciences; Environmental Research; Geosciences; Natural Sciences