Bacterial genomes with arhdA hits from GTDB (R07-RS207), genome taxonomy and number of hits per method

DOI

Table showing the number of hits per genome of the aromatic ring-hydroxylating dioxygenase alpha subunit from a survey among species-representative GTDB genomes (R07-RS207). The results of two identification methods are compared, one using using HMMER with the Pfam profile PF00848 and a subsequent curation step with a phylogenetic placement tool, and the other using hmm profiles related to aromatic ring dioxygenases from the CANT-HYD approach.

Identifier
DOI https://doi.org/10.34810/DATA2017
Metadata Access https://dataverse.csuc.cat/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.34810/DATA2017
Provenance
Creator Iriarte Martínez, Jon
Publisher CORA.Repositori de Dades de Recerca
Contributor Iriate Martínez, Jon; Universitat de Barcelona
Publication Year 2025
Rights CC0 1.0; info:eu-repo/semantics/openAccess; http://creativecommons.org/publicdomain/zero/1.0
OpenAccess true
Contact Iriate Martínez, Jon (Universitat de Barcelona)
Representation
Resource Type Experimental data; Dataset
Format text/tab-separated-values; text/plain
Size 969818; 5367
Version 1.0
Discipline Earth and Environmental Science; Environmental Research; Geosciences; Natural Sciences