Chromosome differentiaion between Z and W potentially involved in sex determination in turbot

To find diagnostic SNP of the Z and W chromosomes potentially involved in sex determination in turbot, we resequenced five males (ZZ: M1, M2, M3, M4, M5) and five WW females (F1, F2, F3, F4, F5) (WW) using an Illumina 150 bp pair end sequencing approach taking the new turbot genome as reference</p><p>To reassemble the turbot genome using long-read Oxford Nanopore sequecing, we sequenced one ZZ male (NM) and one WW female (NF).</p><p>We genotyped 1181 fishes pertaining to 36 full-sib families and their 46 for 18,214 SNPs using 2bRAD-Seq [53] to look for association between sex and markers at population and family level through genome wide association studies

Identifier
Source https://data.blue-cloud.org/search-details?step=~012112C5D555098F9DD48460DCF2A590176B018E91D
Metadata Access https://data.blue-cloud.org/api/collections/112C5D555098F9DD48460DCF2A590176B018E91D
Provenance
Instrument Illumina HiSeq 2500; MinION; ILLUMINA; OXFORD_NANOPORE
Publisher Blue-Cloud Data Discovery & Access service; ELIXIR-ENA
Contributor University of Santiago de Compostela
Publication Year 2024
OpenAccess true
Contact blue-cloud-support(at)maris.nl
Representation
Discipline Marine Science
Spatial Coverage (-8.800W, 42.500S, -8.800E, 42.500N)
Temporal Coverage Begin 2017-06-01T00:00:00Z
Temporal Coverage End 2019-07-01T00:00:00Z