CalCOFI_NCOG_2014_2016 Metagenome

Sampling for the The NOAA CalCOFI Genomics Program (NCOG) timeseries consists of whole water samples filtered onto 0.2 µm filters for DNA and RNA have been collected at CalCOFI and CCE-LTER stations from 10m, the subsurface chlorophyll maximum layer, 170m and 515m since 2014. A subset of these samples has been used for 16S V4 and 18S V9 and V4 rDNA metabarcoding and total mRNA sequencing. Here we deposit 16S, 18S V9, and metatranscriptomics data from 2014-2016.

Identifier
Source https://data.blue-cloud.org/search-details?step=~012D1EEFC8C21656513963D1CC5B31C1659E5021230
Metadata Access https://data.blue-cloud.org/api/collections/D1EEFC8C21656513963D1CC5B31C1659E5021230
Provenance
Instrument Illumina HiSeq 2500; Illumina MiSeq; NextSeq 550; ILLUMINA
Publisher Blue-Cloud Data Discovery & Access service; ELIXIR-ENA
Contributor J. Crag Venter Institute
Publication Year 2024
OpenAccess true
Contact blue-cloud-support(at)maris.nl
Representation
Discipline Marine Science
Spatial Coverage (-124.325W, 29.844S, -117.304E, 35.089N)
Temporal Coverage Begin 2014-01-29T00:00:00Z
Temporal Coverage End 2016-11-20T00:00:00Z