Sample locations and GBS output files for analysing the population genomics of Tillandsia landbeckii

DOI

This dataset contains the Ipyrad output file in vcf format from a genotyping-by-sequencing (GBS) analysis of 21 populations of Tillandsia landbeckii (307 individuals) from the Atacama Desert between Caldera and Arica. The variant call format (vcf) file is accompanied by a Tillandsia_stats.txt file as part of the output, listing the Ipyrad assembly details. Further, a Tillandsia_GBS_summary.txt file is included with geographic locations of all populations. Sequence reads for the GBS Illumina runs were deposited in the European Nucleotide Archive under the study accession PRJEB35036.

Identifier
DOI https://doi.org/10.5880/CRC1211DB.27
Metadata Access http://doidb.wdc-terra.org/oaip/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=oai:doidb.wdc-terra.org:6744
Provenance
Creator Merklinger, Felix F.; Zheng, Yichen; Luebert, Federico; Harpke, Doerte; Böhnert, Tim (ORCID: orcid.org/0000-0003-1415-7896); Stoll, Alexandra; Koch, Marcus; Blattner, Frank R; Wiehe, Thomas; Quandt, Dietmar
Publisher CRC1211 Database (CRC1211DB)
Publication Year 2019
Funding Reference Deutsche Forschungsgemeinschaft, CRC 1211
Rights CRC1211DB Data policy agreement; https://www.crc1211db.uni-koeln.de/datapolicy/
OpenAccess true
Contact crc1211db-admin(at)uni-koeln.de
Representation
Language English
Resource Type Dataset
Version 1
Discipline Biospheric Sciences; Ecology; Geosciences; Natural Sciences
Spatial Coverage Chile