Cupressus sempervirens transcriptomic data

Dataset

DOI

Isoseq sequence analysis was perfomed on transcriptomic data. Full-length transcript sequences obtained from the five PacBio Isoseq3 libraries are available in the SRA bioproject PRJNA836501 (https://www.ncbi.nlm.nih.gov/bioproject/PRJNA836501).

A total of 417,602 - 709,891 - 684,092 - 665,747 and 665,896 of full-length non-concatemer transcript sequences reads were obtained for the five libraries prepared from scale leaves, immature strobili, mature xylem, phloem and young stem tissues, respectively. Combining these sequences, 317,881 high-quality consensus transcript sequences were obtained through Isoseq3-cluster analysis. The analysis process and the results are available in this collection.

Theses sequences were further collapsed into a final set of 150,650 transcript sequences. This Transcriptome Shotgun Assembly project has been deposited at DDBJ/EMBL/GenBank under the accession GLGR00000000.

Identifier
DOI	https://doi.org/10.57745/YNJDRU
Metadata Access	https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.57745/YNJDRU

Provenance
Creator	Lesur Kupin, Isabelle
Publisher	Recherche Data Gouv
Contributor	Lesur Kupin, Isabelle; Recherche Data Gouv
Publication Year	2026
Rights	etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess	true
Contact	Lesur Kupin, Isabelle (INRAE)

Representation
Resource Type	Dataset
Format	application/zip; application/gzip; text/plain
Size	692494049; 4528992127; 13923
Version	1.6
Discipline	Geosciences; Earth and Environmental Science; Environmental Research; Natural Sciences