orphan genes GO enrichment

Dataset

DOI

With the interproscan, we used GOfuncR (v1.10.0, with R v4.0.5) to do an GO enrichisment on all the orphean genes, we also did it with only multicopy and singlecopy genes. Then we separete them in two groups: all the genes and only the expressed one. We also do the analysis with the refine method of GOfuncR.

The tree of GO was done with this version https://release.geneontology.org/2025-03-16/ontology/go-basic.obo and complied to be used in GOfuncR with https://github.com/sgrote/OboToTerm

Identifier
DOI	https://doi.org/10.57745/Z2UOSP
Metadata Access	https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.57745/Z2UOSP

Provenance
Creator	Péré, Arthur (ORCID: 0000-0002-2070-641X); Etienne GJ Danchin
Publisher	Recherche Data Gouv
Contributor	Etienne GJ Danchin
Publication Year	2026
Funding Reference	Agence nationale de la recherche ANR-13-JSV7-0006
Rights	etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess	true
Contact	Etienne GJ Danchin (INRAE)

Representation
Resource Type	Dataset
Format	application/zip
Size	196640; 526037
Version	1.0
Discipline	Agriculture, Forestry, Horticulture; Life Sciences