Profile hidden Markov models of the ExED Profile hidden Markov models of the Expansin Engineering Database


Profile hidden Markov models and their underlying multiple sequence alignments for the N- and C-terminal protein domains of expansins.

A profile hidden Markov model (HMM) was derived for each expansin domain from a multiple sequence alignment built from 28 representative protein sequences. The profile HMMs for the N- and C-terminal expansin domain were built by HMMER from multiple sequence alignments (structure-guided). Based on the alignment and on annotations of secondary structures in the Pfam database (entries PF03330.17 for the N-terminal domain and PF01357.20 for the C-terminal domain), the respective domains were manually retrieved.

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Metadata Access
Creator Lohoff, Caroline (Universität Stuttgart)
Publisher DaRUS
Contributor Pleiss, Jürgen
Publication Year 2020
Rights CC0 Waiver; info:eu-repo/semantics/openAccess;
OpenAccess true
Contact Pleiss, Jürgen (Universität Stuttgart)
Resource Type Dataset
Format application/octet-stream
Size 2846; 38702; 3516; 4686; 51723; 4966
Version 1.1
Discipline Life Sciences; Medicine