Data, Results and tools code for Seed2LP paper reproducibility

Dataset

DOI

These data repository is a tar.gz containing:

Data: sbml files retrieved from BiGG database, some specific data such as objectives reaction or targeted metabolites from objective reaction, sbml normalised file after Seed2LP normalisation Results: all results obtains from the benchmark to get the data visualisation and analyses used on the Paper Seed2LP Tools: 3 tools needed to compute the results

 Precursor (https://github.com/bioasp/precursor, licence GNU GPL V3)  
 N2PComp (which integrate NetSeedPerl and run both Precursor and Netseed. Netseed has the licence licence GNU GPL V3 and originates from publication 10.1093/bioinformatics/btr721 
 Seed2LP

This repo does not contain the notebooks to execute the run in order to get the results, or to visualise data. These notebooks are available on github : https://github.com/bioasp/seed2lp

Identifier
DOI	https://doi.org/10.57745/OS1JND
Metadata Access	https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.57745/OS1JND

Provenance
Creator	GHASSEMI NEDJAD, Chabname ; BOLTEAU, Mathieu ; BOURNEUF, Lucas ; PAULEVE, Loïc ; FRIOUX, Clémence
Publisher	Recherche Data Gouv
Contributor	GHASSEMI NEDJAD, Chabname; FRIOUX, Clémence; Université de Groningen; Entrepôt-Catalogue Recherche Data Gouv
Publication Year	2024
Funding Reference	Agence nationale de la recherche ANR-22-PEAE-0011
Rights	etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess	true
Contact	GHASSEMI NEDJAD, Chabname (Pléiade team ; Inria); FRIOUX, Clémence (Pléiade team ; Inria)

Representation
Resource Type	Dataset
Format	application/x-gzip
Size	2652609771
Version	1.0
Discipline	Computer Science