Contemporary natural selection and potential for evolutionary change in maritime pine (P. pinaster Aiton), a keystone forest tree

DOI

The dataset "Pinaster_genotypes_Lacanau&Tocchi_10652SNPs.xlsx" contains individual genetic information and was produced by a consortium of European research Intitutes. For the data collection, needles were sampled from a total of 1,500 individuals from 2 maritime pine populations located in French (Lacanau) and Italian (Tocchi) Genetic Conservation Units (GCUs). 10,652 SNPs were genotyped from the multispecies 4TREE SNPs chip (chip produced within the framework of the B4est project). This dataset was used to carry out a quantitative genetics and evolutionary biology study (i.e., parentage/mating model analyses and heritability estimates).

The dataset "WD_Lacanau-Tocchi.xlsx" contains individual adult tree relative wood density measured in situ using a SC-650 resistograph (Rinntech, Heidelberg, Germany). Median values were calculated for each tree from individual density profiles using the R package densitR (https://github.com/krajnc/densitr; Krajnc, 2020).

The dataset "" contains individual adult tree fitness values (effective fecundity in the form of the number of established offspring computed using MEMM and CERVUS), standardized phenotypic traits (growth and functional traits) measured and predicted using in-situ direct assessment, drone flights and near-infrared spectroscopy for each of the adult trees in Lacanau and Tocchi populations and covariates used in this study (data paper for phenotypic data to be published soon). These datasets were used to compute selection gradient and heritability estimates.

Identifier
DOI https://doi.org/10.57745/FXGNEG
Metadata Access https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.57745/FXGNEG
Provenance
Creator Theraroz, Adelaïde ORCID logo; Solé-Medina, Aida ORCID logo; Krajnc, Luka (ORCID: 0000-0002-3120-559X); Alía, Ricardo ORCID logo; Grivet, Delphine ORCID logo; Arrojo, Mara; Avanzi, Camilla ORCID logo; Olsson, Sanna ORCID logo; Piotti, Andrea ORCID logo; Bagnoli, Francesca ORCID logo; Sekely, Jill (ORCID: 0009-0002-3186-412X); Mestre Runge, Christian ORCID logo; Belmokhtar, Nassim ORCID logo; Rozenberg, Philippe ORCID logo; Mencuccini, Maurizio ORCID logo; González-Martínez, Santiago C. ORCID logo; Westergren, Marjana ORCID logo
Publisher Recherche Data Gouv
Contributor Theraroz, Adelaïde; Westergren, Marjana; González-Martínez, Santiago C.; INRAE; IBBR-CNR; INIA-CSIC; National Research Institute for Agriculture Food and Environment; Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria; Institute of Biosciences and BioResources, National Research Council; Entrepôt Recherche Data Gouv
Publication Year 2025
Funding Reference European Union’s Horizon 2020 862221
Rights etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess true
Contact Theraroz, Adelaïde (INRAE); Westergren, Marjana (Slovenian Forestry Institue); González-Martínez, Santiago C. (INRAE)
Representation
Resource Type Dataset
Format application/vnd.openxmlformats-officedocument.spreadsheetml.sheet; text/tab-separated-values
Size 61636555; 17407
Version 1.0
Discipline ['Other']; ['Pinus pinaster']; ['Mediterranean vs Atlantic environments']; ['Growth and functional traits']; ['heritability']; ['Selection gradient']