cpDNA alignments and phylogenetic trees of Cristaria (Malvaceae) from the Atacama Desert

DOI

The dataset contains material of the historical biogeographic study of the plant genus Cristaria (Malvacae) in the Atacama Desert. We provide here (1) the time calibrated phylogeny of the family Malvaceae in .tre data format (Cristaria_cp_4Foss_BeastTree.tre). Further (2) we provide two nexus files used for all phylogenetic analysis of the paper. The first nexus file (Cristaria_cp_Master.nex) is the concatenated sequence alignment with character set annotations for the three chloroplast marker (trnK/matK, rpl16, ndhF) as well as for hotspot regions and sequence inversions which were excluded and reverse complemented for analysis. The second nexus file (Cristaria_cp_Master_HSEX_INVREV.nex) is identical to the first one except from the fact that all hotspot regions were excluded and the inversions reverse complemented. This dataset was used for all phylogenetic studies as it is presented here. Finally (3), we provide a combined tree file (Cristaria_cp_RAxML-tree_BS_PP.xtg) including the phylogenetic tree of the Maximum Likelihood analysis (RAxML) with additional posterior probability values from the Bayesian Inference analysis (MrBayes). The tree file can be loaded with the program TreeGraph2 (Ströve

Identifier
DOI https://doi.org/10.5880/CRC1211DB.26
Related Identifier https://doi.org/10.1016/j.gloplacha.2019.102992
Metadata Access http://doidb.wdc-terra.org/oaip/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=oai:doidb.wdc-terra.org:6697
Provenance
Creator Böhnert, Tim (University of Bonn, Nees Institut for Biodiversity of Plants); Luebert, Federico (University of Bonn, Nees Institut for Biodiversity of Plants); Ritter, Benedikt (University of Cologne, Institute of Geology and Mineralogy); Merklinger, Felix F. (University of Bonn, Nees Institut for Biodiversity of Plants); Stoll, Alexandra (CEAZA,); Schneider, Julio (Senckenberg Research Institute and Natural History , Botany); Quandt, Dietmar (University of Bonn, Nees Institut for Biodiversity of Plants); Weigend, Maximilian (University of Bonn, Nees Institut for Biodiversity of Plants)
Publisher CRC1211 Database (CRC1211DB)
Publication Year 2019
Funding Reference Deutsche Forschungsgemeinschaft, CRC 1211
Rights Creative Commons - Attribution-ShareAlike 4.0 International[CC BY-SA 4.0]; http://creativecommons.org/licenses/by-sa/4.0/
OpenAccess true
Representation
Language English
Resource Type Dataset
Version 1
Discipline Biogeography; Biology; Biospheric Sciences; Geosciences; Life Sciences; Natural Sciences
Spatial Coverage (-72.670W, -38.875S, -65.726E, -18.043N); Chile