Replication Data for "multistrap: boosting phylogenetic analyses with structural information"

DOI

Dataset for the replication of the analysis presented in "multistrap: boosting phylogenetic analyses with structural information".

Overview of the Content of the uploaded dataset and its Structure:

ids: Contains the full list of the identifiers of the datasets.

ids_titration: Contains the 56 identifiers used for the titration analysis.

pdb/: Contains all the PDB structures for each of the sequences of each dataset.

alignments/: Contains the untrimmed alignments produced with mTMalign, used for downstream analyses.

matrices/

{IMD,ME}/: Contains the distance matrices computed using the untrimmed mTMalign alignments. /replicates: Contains 100 replicate distance matrices for each dataset for IMD. trees/

{IMD,ME,ML}/: Trees computed with the tree method specified in the folder name. /replicates: Contains the 100 replicate trees for each dataset. auc_analysis/: Contains the files necessary to replicate the AUC analysis.

Identifier
DOI https://doi.org/10.34810/data2507
Related Identifier IsSupplementTo https://doi.org/10.1038/s41467-024-55264-0
Metadata Access https://dataverse.csuc.cat/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.34810/data2507
Provenance
Creator Santus, Luisa ORCID logo; Mansouri, Leila ORCID logo; Baltzis, Athanasios ORCID logo; magis, cedrik (ORCID: 0000-0003-4368-445X); notredame, cedric ORCID logo
Publisher CORA.Repositori de Dades de Recerca
Contributor SANTUS, LUISA; Centre for Genomic Regulation; Universitat Pompeu Fabra
Publication Year 2025
Rights CC0 1.0; info:eu-repo/semantics/openAccess; http://creativecommons.org/publicdomain/zero/1.0
OpenAccess true
Contact SANTUS, LUISA (Universitat Pompeu Fabra)
Representation
Resource Type Process-produced; Dataset
Format text/plain; charset=US-ASCII; application/zip; application/octet-stream; text/plain
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Version 1.0
Discipline Life Sciences; Medicine