Alca torda(Razorbill) genome assembly, primary haplotype, bAlcTor1

The raw data and assembly of this submission are currently under a G10K-VGP publication embargo until removed from this description, following the G10K data use policy at the following URL: https://genome10k.soe.ucsc.edu/about/data_use_policy. The Razorbill is a colonical seabird and it is the closest living relative of the extinct great auk (Pinguinis impennis). The sample was provided by Copenhagen Zoological Museum and this reference assembly of has been produced as part of the G10K-VGP Project. Genome sequencing was conducted Olivier Fedrigo's group at the Rockefeller University Vertebrate Genome Lab. The genome assembly was conducted by the G10K-VGP group, by Arang Rhie and Sergey Koren of Adam Phillippy's lab at NIH. Manual curation of chromosomes and other genomic features was conducted by the gEVAL group led by Kerstin Howe at the Sanger Institute. The primary haplotype contains the longest contigs of the Pacbio FALCON unzip assembly, scaffolded with 10X linked reads, Bionano optical maps, and Arima HiC reads, with multiple tools to further separate out haplotypes. Funding was provided by the Maine Department of Inland Fisheries of Wildlife to Tom Gilbert, HHMI and Rockefeller start-up funds to Erich Jarvis, and individual grants and awards to the persons listed above.

Identifier
Source https://data.blue-cloud.org/search-details?step=~0125A0E30A292E65331A74A42AFA98109ECFFA636E7
Metadata Access https://data.blue-cloud.org/api/collections/5A0E30A292E65331A74A42AFA98109ECFFA636E7
Provenance
Instrument Illumina NovaSeq 6000; Sequel II; ILLUMINA; PACBIO_SMRT
Publisher Blue-Cloud Data Discovery & Access service; ELIXIR-ENA
Contributor G10K
Publication Year 2024
OpenAccess true
Contact blue-cloud-support(at)maris.nl
Representation
Discipline Marine Science
Spatial Coverage (9.800W, 55.283S, 9.800E, 55.283N)
Temporal Point 2023-07-22T00:00:00Z