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Expansin homologues in actinobacterial genomes from South Africa
Hit sequences for putative expansins (or expansin domains) are reported from an exemplary genome screening. Five actinobacterial genomes were selected to show the application of... -
Occurrence of expansins in the tree of life
Comparison between expansins found in the Expansin Engineering Database (ExED) and literature. -
Deep enzymology data related to Adam et al.: DNA sequence-dependent activity ...
Methylation of long hemimethylated DNA substrates: Methylation of the 349 bp long hemimethylated substrate with DNMT1 was carried out in 1X methylation buffer (100 mM HEPES, 1... -
Deep enzymology data related to Adam et al.: DNA sequence-dependent activity ...
Methylation of random flank substrates: Libraries of double stranded DNA substrates with unmethylated or hemimethylated CpG sites in randomized sequence context were methlyated... -
Deep enzymology data related to Gao et al.: Comprehensive structure-function ...
Experimental procedures: Libraries of double stranded DNA substrates with CpG, CpH or CpN sites in randomized sequence context were methlyated by DNMT3A or DNMT3B. Reactions... -
Expansin domains in CBM63 sequences
The occurrence of N- and C-terminal expansin domains in CBM63 sequences from the CAZy database. Protein sequences are represented by NCBI accessions. Expansin domains were... -
GraphML files for protein sequence networks of expansin homologues
GraphML files for undirected weighted graphs with nodes that represent protein sequences of expansin homologues. Protein sequences were clustered by a threshold of sequence... -
Profile hidden Markov models of the ExED
Profile hidden Markov models and their underlying multiple sequence alignments for the N- and C-terminal protein domains of expansins. A profile hidden Markov model (HMM) was... -
Query sequences for the update of the ExED
Query sequences for the individual BLAST searches used to update the Expansin Engineering Database (ExED, https://exed.biocatnet.de/). -
Query sequences for the update of the LccED
Query sequences for the individual BLAST searches used to update the Laccase and Multicopper Oxidase Engineering Database (LccED, https://lcced.biocatnet.de/). -
3D Cryo-FIB SEM - Mallomonas Dataset
Dataset of raw and image processed 3D Cryo-FIB SEM data recorded from Mallomonas cells. -
The modular structure of alpha/beta-hydrolases: similarity of the N- and C-te...
To analyse the structural similarities of the N- and C-terminal domains, representative protein structures of each oxyanion hole type from the proteins of alpha/beta-hydrolase... -
COLife_04 - Multi-Scale More-than-Human Atlas Gigamaping, Ecosystem Mapping a...
The dataset presents the Multi-Scale More-than-Human Atlas Gigamapping Workshop output that should evaluate and suggest new developments of COLife project prototyping. We also... -
COLridor - Responsive Wood Insect Hotels
The dataset is releasing fabrication data of two prototypes produced in Prague - TreeHugger CZ and Nicosia - TreeHugger CY. These are responsive wood insect hotels produced in... -
Percentile Intervals in Bayesian Inference are Overconfident
This dataset demonstrates the difference in calculating percentile Intervals as approximation for Highest Density Intervals (HDI) vs. Highest Posterior Density (HPD). This is... -
HPLC raw data related to Koeppl et al.: Structure, function and substrate pre...
In this study, synthesis and cleavage reactions catalysed by S-adenosyl-L-homocysteine hydrolases originating from different domains of life were investigated. The reactions... -
Replication Data for: Coupled Simulations and Parameter Inversion for Neural ...
This dataset allows to reproduce the results from the paper "Coupled Simulations and Parameter Inversion for Neural System and Electrophysiological Muscle Models" submitted to... -
MRI based perfusion of rats with 60% PVL
The study investigates in vivo liver perfusion in rats. Perfusion of ligated and non-ligated liver lobes of 25 rats was monitored via MRI. Rats were subjected to 60% Portal Vein... -
Bayesian Modeling of Time Series Data (BayModTS)
BayModTS is a FAIR workflow for processing highly variable and sparse data. The code and results of the examples in the BayModTS paper are stored in this repository. A... -
Data for: 'EnzymeML-based modeling workflow: from raw data to kinetic paramet...
Kinetic parameter estimates for small laccase (SLAC) catalyzed oxidation of ABTS, investigated across the temperature range between 25 °C and 45°C. This dataset contains the...