Expansin domains in CBM63 sequences

DOI

The occurrence of N- and C-terminal expansin domains in CBM63 sequences from the CAZy database. Protein sequences are represented by NCBI accessions. Expansin domains were annotated with the hmmscan command from the HMMER software package. The hits were filtered by a minimal domain-based score of 35 or 20 (chosen after comparison with HMMER’s domain-based “independent” e-values), a minimal hit length of 60 amino acids, and a maximal ratio of bias over domain-based score of 10%.

Sequences were downloaded from the Carbohydrate-Active enZYmes Database (CAZy) on June 3, 2019.

Identifier
DOI https://doi.org/10.18419/darus-625
Related Identifier https://doi.org/10.1002/prot.26001
Metadata Access https://darus.uni-stuttgart.de/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.18419/darus-625
Provenance
Creator Lohoff, Caroline
Publisher DaRUS
Contributor Pleiss, Jürgen
Publication Year 2020
Rights CC BY 4.0; info:eu-repo/semantics/openAccess; http://creativecommons.org/licenses/by/4.0
OpenAccess true
Contact Pleiss, Jürgen (Universität Stuttgart)
Representation
Resource Type Dataset
Format text/tab-separated-values
Size 8605; 8270
Version 2.1
Discipline Life Sciences; Medicine