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Eguchipsammia fistula Targeted loci environmental
bacterial community of E. fistula coral samples reared long term (> 1 year) in aquaria -
The sea star, Pisaster ochraceus, has unique and dominant bacteria.
All animals live in close association with bacteria, but for most hosts little is known about the distribution and host-specificity of these bacteria. We used amplicon... -
surficial deep-sea sediment metagenome from the South Pacific
To understand the microbial processes that contribute to the removal of the labile organic matter, metagenomic sequencing and analysis was carried out on a sample of sediment... -
A new species of Sunamphitoe Bate, 1857 (Amphipoda: Ampithoidae) from Hokkaid...
We are trying to describe a new species of amphithoid amhipod. In this study, nucleotide sequences of mitochondrial cytochrome c oxidase subunit I were obtained from the type... -
Seagrass (Zostera marina) transplant experiment reveals core microbiome and r...
Zostera marina (seagrass) is a coastal marine angiosperm that sustains a diverse and productive ecosystem. Seagrass-associated microbiota support host health, yet the ecological... -
Cold seep sediment Transcriptome or Gene expression
Large sulfur-oxidizing bacteria in the family Beggiatoaceae are important players in the global sulfur cycle. This group contains members of the well-known genera Beggiatoa,... -
Drivers of temporal and inter-individual microbiome variation in a coastal fo...
Marine macroalgae (i.e. seaweeds) are coastal foundation species, colonized by diverse and variable microbial communities. Microbes influence macroalgal health and ecosystem... -
Earth Microbiome Project Multi-omics (EMP500)
The Earth Microbiome Project Multi-omics component (EMP500) involves amplicon and shotgun metagenomic sequencing and metabolomic profiling of over five hundred microbial... -
Dendrophyllia sp., Eguchipsammia fistula, Rhizotrochus typus Targeted loci en...
Microbes associated with deep-sea coral remain poorly studied. The lack of symbiotic algae has led to the suggestion that associated microbes may play a fundamental role in... -
Metagenomes from the marine sponge Ianthella Basta
We applied differential coverage binning of multiple metagenomes from two different microbial cell enrichments derived from the marine sponge Ianthella basta. -
Sponge microbiome stability
A key concept in theoretical ecology is the positive correlation between biodiversity and ecosystem stability. To test the relationship between diversity and community stability... -
Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary
Conventional wisdom holds that PCR amplification for sequencing should employ pooled replicate reactions to reduce bias due to jackpot effects and chimera formation. However,... -
Pocillopora verrucosa metagenome
The functional importance of bacteria to coral holobiont health and functioning is increasingly acknowledged. Yet, we know surprisingly little about bacterial community dynamics...