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Microbiota associated with the 2022 Diadema antillarum die-off in Puerto Rico
The Caribbean basin has suffered alarming numbers of collapsing marine populations due to diseases in recent decades. The well-documented die-off episode of the long-spined sea... -
Temporal variations in size and habitat of white sea urchin Tripneustes ventr...
Sea urchins play a critical role as herbivores keeping the balance between coral and algae. The White sea urchin Tripneustes ventricosus is an important herbivore of seagrass... -
Characterization of the intestinal microbiota of the sea cucumber Holothuria ...
High-throughput 16S rRNA gene sequencing has been used to identify the intestinal microbiota of many animal species, but that of marine invertebrate organisms remains largely... -
The sea star, Pisaster ochraceus, has unique and dominant bacteria.
All animals live in close association with bacteria, but for most hosts little is known about the distribution and host-specificity of these bacteria. We used amplicon... -
2018 Australia fish microbiome study
Atl salmon study ABSTRACT Successful rearing of fish in hatcheries is critical for conservation, recreational fishing, and commercial fishing through wild stock enhancements,... -
DNA extraction comparison testing 2019-2020
Our DNA extraction protocol is years old, and we want to compare new extraction methods to address outstanding issues. For more details, check out the motivation and... -
A simple microbiome in the European common cuttlefish, Sepia officinalis
The European common cuttlefish, Sepia officinalis, is used extensively in biological and biomedical research yet its microbiome remains poorly characterized. We analyzed the... -
Environmental factors as the defining influence on intra-species variation of...
Environmental factors as the defining influence on intra-species variation of gastrointestinal microbiota in common carp and rainbow trout -
Earth Microbiome Project Multi-omics (EMP500)
The Earth Microbiome Project Multi-omics component (EMP500) involves amplicon and shotgun metagenomic sequencing and metabolomic profiling of over five hundred microbial... -
Fish microbiota 101: host traits, ecology, and environmental factors influenc...
Fish are the most diverse and widely distributed vertebrates, yet little is known about the microbial ecology of fishes nor the biological and environmental factors that... -
Microbiome of the gastrointestinal tract of the rabbitfish Siganus fuscescens
Investigation of the microbiome in the gastrointestinal tract of the rabbitfish Siganus fuscescens including samples from the gut content and gut wall of the mid and hind gut... -
Insights into the microbiota of Asian seabass (Lates calcarifer) with tenacib...
Outbreaks of diseases in farmed fish remain a recurring problem, despite the development of vaccines and improved hygiene standards on aquaculture farms. One commonly observed... -
stickleback gut microbiota depended on parasite exposure
Cestode-exposed fish (infected or uninfected) had different microbial communities than the sham-exposed control fish. -
RPA_amplified_Escherichia coli_library reads
RPA amplified E.coli sequencing data -
Habitat conditions reflect compositional differences in microbiome among Cari...
Sea urchins are considered one of the most common benthic grazers in tropical marine ecosystems and can exert a strong in??uence in the community structure. The sea urchins... -
gut microbiome response to helminth infection
The host microbiome differed between infected and uninfected fish, but the magnitude of this difference depended on both host sex and genotype. -
Olympia Oyster Microbiome
Olympia Oyster (Ostrea lurida) populations rapidly declined in Washington over a century ago. Currently, there are efforts by the state of Washington DNR to monitor Ostrea...