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Optimizing laboratory methods for metabarcoding marine fish
We tested modifications to our laboratory eDNA metabarcoding protocol to better understand determinants of species detection. -
Bacterial community dynamics following antibiotic exposure in a trematode par...
Parasites harbour rich microbial communities that may play a role in host-parasite interactions, from influencing the parasites infectivity to modulating its virulence.... -
De novo transcriptome assembly data of the marine toxic dinoflagellate Dinoph...
Diarrhetic shellfish poisoning (DSP) has emerged as a significant and expanding seafood safety threat in coastal regions across the country and observations of intensifying... -
ENVISION (I, II, III) Mesocosms (with water from stn 3)
ENVISION aims at examining for the first time the dynamics of B-vitamins and their role in microbial plankton dynamics at adequate spatial and temporal scales in a highly... -
Bacteriome consistency in a parasitic worm: variation throughout the life cyc...
Microbial communities within metazoans are increasingly linked with development, health and behaviour, possibly functioning as integrated evolutionary units with the animal in... -
ENVISION I Microcosm ADD I 3.0 um prokaryotes
The study was conducted in February 2016 in Vigo (Spain) during one of three cruises. We carried out onboard mesocosm experiments with relevant vitamin additions to study the... -
Metagenomic profiling of bacterial communities associated with Tyrian Purple ...
Dicathais orbita is a marine mollusc well known for the production of anticancer compounds that are precursors to Tyrian purple. This study aimed to assess the full diversity of... -
Role of Tissue-specific Microbiota in Initial Establishment Success of Pacifi...
We transplanted oysters from two invasive, genetically distinct invasive populations of the Wadden sea (Texel, Netherlands and Sylt, Germany, and monitored the short term... -
ACIDD ash incubation experiments
18S sequencing data from incubation experiments testing the response of protist communities during exposure to wildfire ash leachate conducted off the coast of California during... -
SMPier, Amplicon sequencing Raw sequence reads
Daily surface water sampling at Santa Monica Pier, CA, during pseudo nitzschia bloom. -
Optimization and application of environmental DNA (eDNA) tools for benthic bi...
Environmental-(e)DNA approaches have the potential to provide unprecedented insight into the structure of marine benthic communities at a fraction of the cost of... -
Zooplankton diversity along Yalujiang Estuary
Assessing the performance of metabarcoding on zooplankton identification -
Opportunistic macroalgae blooms (green tides) monitoring along the North and ...
<p>Opportunistic macroalgae blooms (green tides) data are collected during monitoring surveys on the English Channel / Bay of Biscay French coasts since 2008 (Quadrige... -
Water column Macquarie Harbour Raw sequence reads
16S rRNA amplicon sequences ARGNK files for archaea (A16S) AWDHF files for bacteria (16S) -
Transcriptome of stomatopod Neogonodactylus oerstedii eye
The goal of the study was to identify and characterize the genes expressed in the stomatopod visual system, focused on the visual pigment gene, opsin. -
Baselines Initiative 16S rRNA gene dataset: Baselines Amplicon Release 2 (R2)...
The overall objective of this project (Baselines Initiative) is to generate several 16S rRNA gene databases to establish robust baseline information on the biological... -
New Jersey Ocean Trawl and eDNA Survey 2019
Project compared trawl and eDNA species diversity, seasonality, and relative abundance. -
plume
plume bacteria and laby -
ENVISION (I, II, III) Transect (Station 3 and 6, day 1, 3, 5, and 7)
ENVISION aims at examining for the first time the dynamics of B-vitamins and their role in microbial plankton dynamics at adequate spatial and temporal scales in a highly... -
Seagrass Microbiome (sediment JP)
Although seagrass ecosystems have high productivity and critical economical functions, massive declines have occurred worldwide mainly due to human-induced environmental...