20 datasets found

These data come from a RNA-seq experiment looking for differences in gene expression between shy and bold brook trout from Lake Superior.

The Marcellus Shale Region is found along the east coast and covers most of PA. This region has been greatly affected by hydraulic fracturing (HF), or fracking, which is a...

Sequencing files used in analysis of the benefits of STACKS clonefilter on sequencing data.

Pool sequencing of 40 adult male from the Laval strain of Brook Charr to characterize polymorphic sites to be used to mask C/T SNPs in whole-genome bisulfite sequencing data.

RNAseq differential gene expression analyses of 38 Brook Trout individuals from 12 streams in northwestern Pennsylvania revealed significant associations of gene expression and...

These data comprise restriction site-associated DNA sequencing (RADseq) data for 201 wild-caught brook trout (Salvelinus fontinalis) from 82 sites spanning much of the native...

This study's aim is to evaluate Brook Trout health in response to Unconventional Natural Gas Extraction (UNGD), also known as fracking, via RNA-Seq methods performed on liver...

Transcriptome analysis of 11 brook trout tissues

Includes RADseq data for brook trout in Nipigon Bay and tributaries, Lake Superior

This dataset was produced from a full-sib family of Brook Charr Salvelinus fontinalis with the aim of constructing gene co-expression networks, then analyzing for differences...

The identification of DNA regions evolving under the effect of either positive or stabilizing selection, as well as the quantification of the intensity of the selective...

GBS study of adaptation and maladaptation of Salvelinus fontinalis in Quebec, Canada

We investigated the importance of thermal regime during parental sexual maturation and offspring rearing on the offspring methylome in brook charr. Parents were split between...

Brook charr Salvelinus fontinalis is a salmonid species of importance for conservation, aquaculture and sports fisheries. Salvelinus is also an under-represented branch of...

These data comprise restriction site-associated DNA sequencing (RADseq) data generated using RAD capture for 260 wild-caught brook trout (Salvelinus fontinalis) from 8 waterways...

Large-scale metagenome assemblies of human microbiomes have produced a huge catalogue of previously unseen genomic data, but has been applied to only a few of the >66 000...

GBS study of adaptation and maladaptation of Salvelinus fontinalis in Quebec, Canada

Directional selection in the domestication of fish species has resulted in rapid gains of growth, body size, and other production-relevant traits in relatively few generations....

A double digest restriction site-associated DNA sequencing (ddRAD-seq) protocol (Protocol S1 Peterson et al. 2012) with EcoRI and SphI was performed on samples of S. fontinalis...

The collapse of the Northwest Atlantic cod (Gadus morhua) stocks in the early 1990s led to widespread ecological changes offshore. Changes in coastal fish communities are less...