102 datasets found

Study Metabolic shifts induced in vivo after perinatal exposure to low doses of BPA in CD-1 mice were assessed. In this study conducted by the ToxAlim-MeX team and the Tufts...

Sequencing data used in the manuscript including (1) The sequencing data of 16S, WMS and 2bRAD-M for MOCK (MOCK CAS and ATCC MOCK MSA 1002) and FFPE (only 2bRAD-M sequencing...

The important role of mice as a model in research of microbe host interactions increased the need for determining the limits of such experiments due to host specificity and...

Comparison of conserved TAD boundaries reveals that diverging CTCF sites is an evolutionary conserved signature associated with TAD borders Overall design: 4C-seq samples for...

Leptosphaeria maculans (anamorph Phoma lingam), the causal agent of blackleg disease in Brassica napus, poses a continual threat to canola/rapeseed production The overall goal...

This study aims to characterize the human skin facial microbiome at high resolution, covering the entirety of one side of the human face. High resolution spatial profiling has...

Lactobacillus casei (L. casei), a normal resident of the gastrointestinal tract of mammals, has been extensively studied over the past few decades for its probiotic properties...

We mapped DNA methylation in 580 animal species (535 vertebrates, 45 invertebrates), resulting in 2443 genome-scale, base-resolution DNA methylation profiles of primary tissue...

We use a novel approach (an analysis of metatranscriptomics data) to study antibiotic resistance, a topic that poses major health care concerns. We investigate resistance gene...

The aggregation of TAR DNA binding protein 43 kDa (TDP-43) induces neurodegeneration which is accompanied with microglial activation. Physical exercise is one promising strategy...

EXPression AloNg Development and Evolution (EXPANDE) project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief, taking advantages...

This project collects the genomic and transcriptomic data generated for Tinca tinca, common name tench, to facilitate genome assembly and annotation as part of the Darwin Tree...

Neuronal gene expression of the visual cortex in hooded seal and mouse to identify the molecular mechanisms underlying hypoxia tolerance of the seal brain

TCR Repertoire sequencing raw reads TCR alpha and beta for several species

PRO-seq experiments in multiple organisms. Also, PRO-seq experiment of Nelfb and Nelfe degron mESC in serum/LIF with or without dTAG-13. Overall design: We used Precision...

Cytosine DNA methylation is a heritable epigenetic mark present in many eukaryotic organisms. While DNA methylation likely has a conserved role in gene silencing, the levels and...

We report time-series transcriptome of developing bamboo shark fin buds and mouse forelimb buds, and open chromatin regions of developing mouse forelimb buds. The major...

Endogenous retroviruses (ERVs) are transposable elements that cause host genome instability and usually play deleterious roles such as tumorigenesis. Recent advances also...

A latitudinal biodiversity gradient has captivated ecologists for years, and has become a widely recognized pattern in biogeography, manifest as an increase in biodiversity from...

As a small top predator, Amur leopard cat (Prionailurus bengalensis euptilurus) is widely distributed in Northeast Asia and plays an important role in the control of small...