19 datasets found

Proteomic mass spectrometry data supplementing the data published in the thesis: Identification of NSM2 proximal proteins by APEX2-mediated proximity labeling in Jurkat cells....

In this project, we aimed to understand how T cell responses contribute to the disease progression of amyotrophic lateral sclerosis (ALS). The present data is on single-cell...

figures, source code, molecular dynamics(MD) simulation files for the publication

A synthetic AIRR dataset which can be used to test immuneML. To use the dataset you should follow the guidelines in the README.txt file contained within the dataset.

All the input data required for simulating the immune state-associated signal and subsequent machine learning model training used in the article "Profiling the baseline...

This dataset contains the original specification files and complete results for immuneML use case 1: Replication of a published study inside immuneML. To use the dataset you...

Contains python codes, checkpoint files, and deep learning outputs for the paratope-epitope interaction study

This dataset contains the data, original specification files, GLIPH2 input/output files and complete results for immuneML use case 2: Extending immuneML with a deep learning...

This dataset contains the original specification files and complete results for immuneML use case 3: Benchmarking machine learning methods for AIRR classification on...

Overview of Acton lab projects and research questions 2016-2023

Raw data to accompany figure 2 - Effects of CLEC-2 on ECM production by FRCsIncludes sample list in all format and and fastq files from RNAseq runs.Data set 28GBAbstractLymph...

Presentation from EMBO workshop - Mesenchymal cells in inflammation and Cancer - Athens May 2019

T cell receptor sequence data of 26 people living with HIV on long-term anti-retroviral therapy, and 12 HIV-negative healthy controls, produced using the UCL Chain lab protocol....

Data to accompany figure S2Proteomics of FRC-derived matricesIn vitro FRC cell line-derived matrices generated after 5 days in culture were subjected to proteomic analysis by...

Poster presented by Dr Lotte de Winde at #EMBOmesenchymalcells Athens May 2019Poster - Regulation of Podoplanin Expression and Function

Fold difference values from TMT proteomics of total protein and phosphopeptides, 5 biological replicates: control vs CLEC-2 stimulated. 15 minutes and 24 hour time...

T cell receptor sequence data of alopecia patients before and during sensitisation with diphenylcyclopropenone and healthy volunteers at equivalent timepoints, using the UCL...

Poster from Infection and Immunity Symposium - Royal Free, UCL 2019

   3D confocal images of: Figure1: 3D-UHU model Figure3: UPK1,II,III, and Chondroitin sulphate Figure4: CK8, CK13, and CK20 Figure5: E-cadherin, ZO-1, Claudin1, and Claudin3...