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Gasterosteus aculeatus Raw sequence reads
These data are from a ChIP-seq experiment using an antibody designed to recognize the centromeric histone CENP-A in the threespine stickleback (Gasterosteus aculeatus) fish. The... -
Gasterosteiformes Genome sequencing and assembly
Molecular evidence of intergeneric genomic introgression</p><p>in Gasterosteiformes of White Sea basin -
Gasterosteus aculeatus Raw sequence reads
Paired RAD reads for 30 sib/half sib familes of threespine stickleback (605 individuals, parents & offspring). -
Gasterosteus aculeatus Isoseq Transcriptome Reads
Long and short reads created for threespine stickleback tissues -
Habitat-specific gene expression in stickleback immune tissues from four para...
The three-spined stickleback (Gasterosteus aculeatus) has repeatedly colonized and adapted to diverse freshwater habitats since the last glaciation. Among those freshwater... -
Genomics of adaptation in North Uist stickleback
Genomic study of parallel adaptation in acidic, basic and marine populations of the North Uist island (Scotland).</p><p>Data are generated by pooled parallel-digest... -
European three-spined stickleback (Gasterosteus aculeatus) RAD-seq
The three-spined stickleback (Gasterosteus aculeatus) is a model organism for studies of parallel evolution in the wild marine stickleback populations have repeatedly colonized... -
Gasterosteus aculeatus RNA-seq paired with ATAC-seq
RNA-seq fastqs from paired samples that went through ATAC-seq (PRJNA686097) -
Transgenerational salinity acclimation experiment with Baltic three-spined st...
Baltic three-spined sticklebacks (Gasterosteus aculeatus) were acclimated within and across generations to decreased (20 to 6 PSU) and increased (20 to 33 PSU) salinity while... -
Contemporary Alaskan Threespine Stickleback whole genome Pool-Seq
Whole genome sequencing Pool-Seg data for 23 Threespine Stickleback population time points from 1999 to 2017 from Loberg Lake, Cheney Lake, Scout Lake and Rabbit Slough, Alaska -
Hart and Miller 2017 G3 sequencing data
Sequencing data in Hart and Miller 2017 G3 paper used to map stickleback fish Casper albino locus to Hps5. Contains 47 F2 fish plus two grandparents used for bulked segregant... -
Japan Sea x Threespine stickleback parent-offspring quartets
Whole genome sequencing data for 15 parent-offspring quartets (Gasterosteus aculeatus x G. nipponicus crosses). -
Ancient genomic variation underlies recent and repeated ecological adaptation
Sequence data in support of publication "Ancient genomic variation underlies repeated ecological adaptation in young stickleback populations."</p><p>ABSTRACT:... -
Marine stickleback fish Restriction-site associated DNA (RAD) sequencing (Sbf1)
Empirical data to provide evidence for the genomic signatures of parallel adaptation from shared genetic variation in three-spined stickleback. -
Predominance of cis-regulatory changes in parallel expression divergence of s...
Adaptive evolution of gene expression may proceed via mutations influencing cis-regulatory elements such as promoters or enhancers or trans-acting factors such as transcription... -
Field application of de novo transcriptomic analysis to evaluate the effects ...
Freshwater salinization poses global challenges for aquatic organisms inhabiting urban streams, impacting their physiology and ecology. However, current salinization research... -
Gasterosteus aculeatus Raw sequence reads
Gasterosteus aculeatus, infected with Schistocephalus solidus -
Personal and transgenerational cues are nonadditive at the phenotypic and mol...
Organisms can gain information about their environment from their ancestors, their parents, or their own personal experience. “Cue integration” models often start with the... -
Experimental parasite infection causes genome-wide changes in DNA methylation
Laboratory-bred males three-spined sticklebacks (Gasterosteus aculeatus) were assigned to one of two treatments: parasite exposure or control (i.e. no exposure). After infection... -
RNA-seq of 11KA-treated stickleback brain
11KA was implanted in four males and four females of the threespie stickleback (Pacific Ocean form, Japan). For controls, four males and four females were implanted with empty...
