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Replication Data for: "epialleleR: an R/BioC package for quantifying and anal...
This data set contains necessary data sets (simulated next-generation sequencing data, preprocessed public next-generation sequencing data, precomputed analysis results) used to... -
RNA seq - PDPN/CLEC-2 transcription in FRCs
Raw data to accompany figure 2 - Effects of CLEC-2 on ECM production by FRCsIncludes sample list in all format and and fastq files from RNAseq runs.Data set 28GBAbstractLymph... -
HEGP Challenge Dataset 1
Encrypted Dataset #1 for the HEGP Challenge, see https://github.com/encryption4genetics/HEGP-website for more details. Dataset comprises encrypted genotypes of 500 subjects at... -
Persistent T Cell Repertoire Perturbation and T Cell Activation in HIV After ...
T cell receptor sequence data of 26 people living with HIV on long-term anti-retroviral therapy, and 12 HIV-negative healthy controls, produced using the UCL Chain lab protocol.... -
Protein structures predicted using DMPfold2, plus training data
This dataset comprises predicted protein structures from the paper "Ultrafast end-to-end protein structure prediction enables high-throughput exploration of uncharacterized... -
Example Software in R for Homomorphic Encryption
# HEGP.example.R # Author: Richard Mott, UCL Genetics Institute. # (C) 2019 Richard Mott # The function CFW.example() will download public data from Nicod et al 2016 Nature... -
Gap Analysis - spatial description of network spaces
MATLAB https://www.actonlab.co.uk/gap-analysis-matlab/ Instructions to carry out gap analysis on network images. Previously used in https://www.nature.com/articles/nature13814 -
Wild type transketolase dynamics
MD simulation of wild-type E.coli transketolase. Carried out in Gromacs by Haoran Yu. Published in Scientific Reports in 2017 Haoran Yu, Yihan Yan, Cheng Zhang, Paul A. Dalby... -
Cell tracking reference dataset
Raw microscopy images and associated data used for validation of cell tracking algorithms. -
HEGP Challenge Dataset 2
Encrypted Dataset #2 for the HEGP Challenge, see https://github.com/encryption4genetics/HEGP-website for more details. IMPORTANT UPDATE 09/10/2020Data have been replaced with... -
Proposed pathways and protein-protein interaction networks in age-related mac...
CellDesigner files describing pathogenesis pathways and Cytoscape files describing protein-protein interactions of potential relevance in age-related macular degeneration.By... -
Data and scripts for paper "Modelling Membrane Reshaping by Staged Polymeriza...
Data and scripts for paper "Modelling Membrane Reshaping by Staged Polymerization of ESCRT-III Filaments". Including data points for figures in main and SI, and LAMMPS input file. -
The clonal structure and dynamics of the human T cell response to an organic ...
T cell receptor sequence data of alopecia patients before and during sensitisation with diphenylcyclopropenone and healthy volunteers at equivalent timepoints, using the UCL... -
CATH protein domain classification (version 4.2)
CATH is a classification of protein structures downloaded from the Protein Data Bank. We group protein domains into superfamilies when there is sufficient evidence they... -
cellX-predict datasets
Machine learning dataset for cellx-predict -
cellX-predict code
cellX-predict software
