38 datasets found

To identify genes regulated by Tbx15/1822, transcriptomes of ascidian embryos injected with antisense morpholino oligonucleotides against Tbx15/18/22 were analyzed.

This project's aim was to describe the in vitro binding specificity of transcription factor DNA-binding domains from the ascidian Ciona robusta, using a high throughput...

The notochord is a defining feature of the chordates. The transcription factor Brachyury (Bra) is a key regulator of notochord fate but here we show that it is not a unitary...

The notochord is a defining feature of the chordates. The transcription factor Brachyury (Bra) is a key regulator of notochord fate but here we show that it is not a unitary...

Among the Chordates tunicates demonstrate the highest capacity for regeneration, ranging from full-body regeneration in colonial ascidians to appendage regeneration in solitary...

Dynamic gene expression programs determine multipotent cell states and fate choices during development. Multipotent progenitors for cardiomyocytes and branchiomeric head muscles...

The tadpole-type larva of Ciona has emerged as an intriguing model system for the study of neurodevelopment. The Ciona intestinalis connectome has been recently mapped,...

We used 10X Genomics Chromium system to profile single cells from a pool of Wild-type Ciona robusta embyros at 12 hours post fertilization (hpf) Overall design: A few hundred...

The evolution of gene expression programs underlying the development of vertebrates remains poorly characterized. Here, we present a comprehensive proteome atlas of the model...

To assay Rnf149 function during early cardiopharyngeal specification, bulk RNAseq was performed to profile the FACS-purified cardiopharyngeal lineage cells isolated from20 hpf...

Double-digest restriction-site associated DNA sequences (PstI-MseI) for the marine tunicate species Ciona intestinalis, C. roulei and C. robusta.

Transcription factors (TFs) control gene transcription, binding to specific DNA motifs located in cis-regulatory elements across the genome. The identification of TF binding...

RNA-seq data of papillae and body in larval ascidian

Among the Chordates tunicates demonstrate the highest capacity for regeneration, ranging from full-body regeneration in colonial ascidians to appendage regeneration in solitary...

Unravelling the history and pathways of range-shifting species is key for understanding their past, current, and future distributions. Anthropogenic transport of species alters...

Inductive signaling interactions between different cell types are a major mechanism for the further diversification of embryonic cell fates. Most blastomeres in the model...

We wished to identify transcriptional targets of Islet in the papillae of Ciona robusta at 12 hpf, so Islet was overexpressed (FoxC>Islet) in addition to knocking out Islet...

The notochord is a defining feature of the chordates. The transcription factor Brachyury (Bra) is a key regulator of notochord fate but here we show that it is not a unitary...

How two-chambered hearts in basal vertebrates have evolved from single-chamber hearts found in ancestral chordates remains unclear. Here, we show that the teleost sinus venosus...

During development, stem and progenitor cells divide and transition through germ layer- and lineage-specific multipotent states to generate the diverse cell types that compose...