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Single-cell RNA-seq data for control and POU IV-misexpressed Ciona intestinal...
Purpose: Understand how the misexpression of key sensory cell determinant POU IV affects cell type specification of various sensory neurons in the peripheral nervous system in... -
Decoding of genomes of Ciona intestinalis typeB collected from Plymouth and R...
Ciona intestinalis has been used for studies of developmental genomics and evolutionary genomics. There are two cryptic species of Ciona, type A and type B. Since we have... -
Whole-genome trio sequencing in sea squirts
Ciona robusta</p><p>Ciona intestinalis</p><p>Ciona roulei</p><p>Ciona edwarsii -
Ectopic expression of the Brachyury transcription factor upregulates only a s...
The key notochord transcription factor Brachyury was ectopically expressed in Ciona embryos under the control of the FoxAa cis-regulatory region (which drives expression in... -
Presence/absence matrix of macrobenthos from the Mingulay Reef Complex (MRC) ...
I attach here 2 excel files: The 1st one is entitled "KAZANIDIS ET AL_ATLAS MINGULAY REEF COMPLEX_MACROBENTHOS DATA". This file contains a presence-absence matrix for... -
Abundance and biomass of macrobenthos in the Black Sea during Mare Nigrum cru...
Dataset containing macrobenthos data for samples collected during April 2008 in the North-West Black Sea (between 44°46' - 43°45' N latitude and 30° 11' - 29°35' E longitude).... -
Bottom meio-fauna abundance recorded on the Romanian NW Black Sea Shelf durin...
This dataset has no description
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Bottom macro-fauna biomass recorded on the Romanian NW Black Sea Shelf during...
This dataset has no description
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Bottom macro-fauna abundance recorded on the Romanian NW Black Sea Shelf duri...
This dataset has no description
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Do DOM quality and origin affect the upake and accumulation of a lipid solubl...
This is an experimental dataset within the field ecotoxicology. The target of the experiment was to find out whether terrestrial derived dissolved organic matter is a better... -
A distinct class of small RNAs arises from pre-miRNA-proximal regions in a si...
We report the comprehensive sequencing of small RNA libraries created from different developmental stages of the basal chordate, Ciona intestinalis. Surprisingly, half of the... -
Phagocytes of Ciona intestinalis
The aim of this study is to seek the origin blood cells by comparing gene expression profiles of mouse and tunicate blood cells. -
DNA Zoo
The DNA Zoo is a consortium focused on facilitating conservation efforts through the rapid generation and release of high-quality genomics resources. -
Ciona Chongmague Genome sequencing
Sequencing reads from hundreds of ciona intestinalis chongmague mutant genomes -
Cytochalasin treatment of Ciona embryos
Cleavage and morphogenesis of Ciona embryos was blocked by treatment with cytochalasin B prior to gastrulation. Drug treated embryos and DMSO treated controls were harvested at... -
Cereblon influences the timing of muscle differentiation in Ciona tadpoles
Thalidomide has a dark history as a teratogen, but in recent years its derivates have been shown to function as a chemotherapeutic agent. These drugs bind cereblon (CRBN), the... -
Controlling nonlinear biological system based on network structure
We have developed a mathematical theory named Linkage Logic, by which key nodes both for observing and controlling dynamics are identified from network structures alone as... -
Single cell RNA seq for Ciona late tailbud embryos
We applied single cell RNA seq with 10x genomics platform to study the cell identity change in Ciona late tailbud embryos. By comparing single cell data from Pax3/7>Foxc amd... -
Genome-wide mapping of DNA methylation in the Ciona intestinalis sperm genome...
In invertebrates, gene body is the primary target of DNA methylation, and only a subset of expressed genes is modified. To reveal methylated and unmethylated gene groups, we... -
Long-read sequencing of chordates during embryonic development
Using de novo transcriptomes obtained by long-read sequencing, we have done a comparison analysis of the average number of transcripts per gene during the embryonic development...
