-
Ciona intestinalis transcriptome project
In mammals, CpG islands are good markers of genes because they are often linked to promoters. Genomic stretches with high frequencies of G+C and the CpG dinucleotide are... -
Comprehensive single cell transcriptome lineages of a proto-vertebrate
Studies of ascidian (sea squirt) embryos have highlighted the importance of cell lineages in animal development for over 100 years. As simple proto-vertebrates, they are also... -
TGFbeta signaling in Ciona
The purpose of this project is to identify genes positively and negatively regulated by signaling molecules that belongs to the TGFbeta superfamily. -
Reprogramming the CNS of the Proto-Vertebrate Ciona intestinalis Using Single...
We applied single cell RNA seq with 10x genomics platform to study co-expression of both Ptf1a and Meis leading to the wholesale transformation of the entire CNS into Coronet... -
Single cell and pooled embryo RNA-seq of of early Ciona embryos
This dataset provides gene expression levels of single cell and pooled embryos as part of a study on zygotic genome activation in Ciona embryogenesis. The single cell RNA-seq... -
The Ciona notochord transcriptome reveals a core set of broadly conserved not...
The notochord is the eponymous feature of the chordates and an essential organ in chordate development. The notochord of the invertebrate chordate Ciona consists of only 40... -
Ciona intestinalis transcriptome analysis
This dataset has no description
-
Ciona intestinalis, RNAseq of the whole larvae.
Transcriptome analysis of Ciona intestinalis larvae. Samples were raised at 18 degree C for 18 hours. -
Comparative analysis of genome-scale, base-resolution DNA methylation profile...
We mapped DNA methylation in 580 animal species (535 vertebrates, 45 invertebrates), resulting in 2443 genome-scale, base-resolution DNA methylation profiles of primary tissue... -
Transcriptomes of the fractionated Ciona ovarian follicles
The entire developmental stages of Ciona ovarian follicles (Stage I to Stage IV) were fractionated using various particle-sized stainless-sieves. RNA-seq on each fraction leads... -
Chromatin immunoprecipitations for Gata.a, Zic-r.a, Tcf7 and their control
This experiment was done for identifying in vivo occupancies of Gata.a, Zic-r.a (Macho-1), and Tcf7 at the 16-cell stage of Ciona intestinalis. These three maternal factors are... -
Transcriptomes of Ciona ovarian follicles treated with U0126
Stage III follicles were isolated from the Ciona ovary and incubated with or without the MEK inhibitor, U0126 for 24 hr. RNA-seq comparison leads to the identification of the... -
EXPANDE project
EXPression AloNg Development and Evolution (EXPANDE) project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief, taking advantages... -
Ciona intestinalis H3K4Me3 ChIP-seq at the early gastrula stage
This dataset was generated to identify regions of the Ciona intestinalis genome marked with the Lysine 4 tri-methyl Histone H3 (H3K4me3) at the early gastrula stage. -
Ciona intestinalis, Ciona roulei, and Ciona robusta raw sequence reads from d...
Double-digest restriction-site associated DNA sequences (PstI-MseI) for the marine tunicate species Ciona intestinalis, C. roulei and C. robusta. -
High-throughput sequence analysis of the SL trans-spliced mRNA population of ...
The goal of the study was to globally identify the SL trans-spliced mRNAs of Ciona intestinalis tailbud embryos, and to map trans-splice acceptor sites onto the genome.... -
Conservation and divergence of methylation patterning in plants and animals
Cytosine DNA methylation is a heritable epigenetic mark present in many eukaryotic organisms. While DNA methylation likely has a conserved role in gene silencing, the levels and... -
LncRNA-seq of the adult tissues (neural complex and ovary) of Ciona intestina...
LncRNA-seq of the adult tissues (neural complex and ovary) of Ciona intestinalis Type A -
Transcriptome sequencing for Ciona intestinalis larvae
Transcriptome sequencing for Ciona intestinalis larvae prehatch (-1hph), just after hatch (0 hph), 4 hours post hatch (hph), 6 hph, 12 hph and at tail regression completed stages. -
Ciona intestinalis Pb Raw sequence reads
We are studying the development of the notochord in Ciona, which is our closest invertebrate relative that is a chordate.
