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Kinetic modeling of enzymatic cephalexin synthesis with neural ODEs and surro...
α-Amino ester hydrolases (AEHs) offer a promising route to the stereoselective synthesis of β-lactams such as cephalexin. However, published kinetic studies have encountered... -
Kelp holobiont responses to run-off in Billefjorden, Svalbard in August 2022
Kelps act as ecosystem engineers and foundation species, providing the food web basis for Arctic coastal, rocky shore ecosystems. Arctic fjords are undergoing large climatic... -
Replication data for: Biochemical changes after cold acclimation in Nordic re...
The data deposited here correspond to the content of analyzed metabolites (carbohydrates, amino acids and phenolic compounds) in red clover crowns before and after cold... -
NGS data related to Sogl et al. "Systematic analysis of specificities and fla...
Analysis of flanking sequence preference with a randomized substrate and bioinformatic data For analysis of the flanking sequence preference, substrate with different target... -
Hacl1 Mouse Proteome
Proteomic dataset of Hacl1 knockout mice. Wild-type and Hacl1 knockout mice liver, kidney, and brain untargeted proteomic analysis. The dataset is part of a study on... -
Replication data for: CP12 controls RuBP recycling and carbon acquisition in ...
This repository is for the microscopy data presented in the manuscript CP12 controls ribulose 1,5 bisphosphate recycling and carbon acquisition in Chlamydomonas reinhardtii... -
Supplemental data: Cortinarius mapuveronicae from South America, a chemical a...
As part of the characterization of the new fungal species Cortinarius mapuveronicae from Patagonian Nothofagus forests, several anthraquinonoid secondary metabolites were... -
Deep enzymology data related to Dukatz et al.: Complex DNA sequence readout m...
Experimental procedures: Libraries of double stranded DNA substrates with CpG, CpH or CpN sites in randomized sequence context were methlyated by DNMT3B. Reactions were stopped... -
Deep enzymology data related to Adam et al.: DNA sequence-dependent activity ...
Methylation of random flank substrates: Libraries of double stranded DNA substrates with unmethylated or hemimethylated CpG sites in randomized sequence context were methlyated... -
Deep enzymology data related to Gao et al.: Comprehensive structure-function ...
Experimental procedures: Libraries of double stranded DNA substrates with CpG, CpH or CpN sites in randomized sequence context were methlyated by DNMT3A or DNMT3B. Reactions... -
Data for: Mechanistic Modeling of In Vivo Translation in Escherichia coli Rel...
The DaRUS repository entails and supplements the simulation data, MATLAB model and graphics for the publication: "Mechanistic Modeling of In Vivo Translation in Escherichia coli... -
MD Simulations with PRDM9
This data collection contains additional data related to Graf et al.: "Investigation and design of the dual specificity of the PRDM9 protein lysine methyltransferase". This... -
Data for: Scaling-up the Bioconversion of Lignin to 2,4-Pyridinedicarboxylic ...
Raw experimental data for the research article: "Scaling-up the Bioconversion of Lignin to 2,4-Pyridinedicarboxylic Acid With Engineered Pseudomonas putida for Bio-Based... -
Data for: Pros and cons of airlift and bubble column bioreactors: How interna...
The DaRUS repository entails the simulation data for the publication "Pros and cons of airlift and bubble column bioreactors: How internals improve performance". Gas... -
Additional data related to Weirich et al.: Discovery of new NSD2 non-histone ...
This data collection contains additional data related to Weirich et al.: "Discovery of new NSD2 non-histone substrates and design of a super-substrate". This includes Modelled... -
NGS data related to Dossmann et al.: Specific DNMT3C flanking sequence prefer...
Cloning and site-directed mutagenesis The gene of the catalytic, C-terminal domain of murine DNMT3C (amino acid residues 439-740 of P0DOY1) was obtained in E. coli codon... -
NGS data related to Adam et al.: On the accuracy of the epigenetic copy machi...
Expression and purification of DNMT1 for biochemical work Full length murine DNMT1 (UniProtKB P13864) was overexpressed and purified as described (Adam, et al. 2020) using the... -
Additional data related to Khella et al.: The T1150A cancer mutant of the pro...
This data collection contains additional data related to Khella et al.: "The T1150A cancer mutant of the protein lysine methyltransferase NSD2 can introduce H3K36... -
NGS data related to Dukatz et al.: DNA methyltransferase DNMT3A forms interac...
The naming of the files is described in the Supplemental Tables 1 of the accompanying manuscript. -
Gene expression data related to Broche et al.: "Genome-wide deposition of 6-m...
In the publication "Genome-wide deposition of 6-methyladenine in human DNA reduces the viability of HEK293 cells and directly influences gene expression" bacterial DNA-adenine...
