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CREST metabarcoding approach to biodiversity monitoring of fishes
This project develops methods for metabarcoding approach to biodiversity monitorin of fishes using environmental DNA (eDNA) from fishes. -
Whole genome sequencing of Mycobacterium marinum
To prove transmission of Mycobacterium marinum in an aquarium tank, we conducted phylogenetic analyses based on whole genome sequencing data of M. marinum strains from animal... -
Genome Sequencing Data from a Marine Microbial Genomics (MMG) Course
Data presented here are the result of an undergraduate Marine Microbial Genomics (MMG) laboratory course (BIOL567L) at San Diego State University (SDSU). The goal of this... -
16S associated with Sharks- -raw sequence reads
16S sequences associated with the white shark (Carcharodon carcharias), tiger shark (Galeocerdo cuvier), and whale shark (Rhincodon typus). -
FISHDIV
The project aims at providing an optimized sampling and analytical framework for eDNA assessment of biodiversity and quantification in fjord systems as a complementary tool to... -
Mitochondrial COI: a promising molecular marker for species identification in...
Traditional morphological methods for species identification are highly time consuming, especially for small organisms, such as Foraminifera, a group of shell-building microbial... -
Developing a DNA Extraction Protocol for Microbiome Characterization of the C...
This study aims to develop and assess a DNA extraction protocol suitable for 16S rRNA amplification