7,243 datasets found

Genes and pathways affected by expression and copy number changes in tumors across projects and cancer types. 1 zip file

This file lists the High Confidence Drivers identified as part of the pan-cancer12 initiative, published in the paper Comprehensive identification of mutational cancer driver...

This database contains information on the genes identified as drivers in Rubio-Perez and Tamborero et al. (2015). It contains information on driver identification at mutational,...

Long noncoding RNAs (lncRNAs, which comprise 68% of the human transcriptome with average length of 1,000 nt) interact with various RNA-binding proteins (RBPs) to mediate...

Raw data of PM2.5 and CO from an indoor wood-combustion experiment. We evaluated the performance of two low-cost sensors measuring fine particulate matter (PM2.5) (HAPEX Nano,...

Database of human genes prioritized for their probability of involvement in dominant or recessive hereditary diseases. Content dom_rec_prediction.sql -> MySQL database...

Mutations, genes and pathways involved in tumorigenesis across 4,623 cancer genomes/exomes from 13 cancer sites. 1 SQL (Structured Query Language) file and 1 WAR (Web...

Web tool for the selection of SNPs from the STAR project with potential functional effect. Més informació: funcSTAR (web) http://bg.upf.edu/funcSTAR/ Docker, 1.12+ Software:...

Cancer gene properties. Content cgprop.war -> Java Website application (deploy in tomcat) cgprop.sql -> MySQL database Example Apache Proxy Pass configuration ProxyPass...

Genome-wide analysis of the H3K4 histone demethylase RBP2 reveals a transcriptional program controlling differentiation. 1 WAR (Web application ARchive) file and 1 SQL...

The cyclin-cdk (cyclin-dependent kinase) inhibitor p27(Kip1) (p27) has a crucial negative role on cell cycle progression. In addition to its classical role as a cyclin-cdk...

Oncodrive-CIS is a method aimed to identify those copy number alterations (CNAs) leading to larger in cis expression changes that may be useful in elucidating the role of these...

HDAC7 is a repressor of myeloid genes whose downregulation in pre-B cells is required for transdifferentiation into macrophages. Software: Docker 1.12+

Machine-learning based approach to classify cancer driver genes into to Activating or Loss of Function roles for cancer gene development.

OncodriveFM detects candidate cancer driver genes and pathways from catalogs of somatic mutations in a cohort of tumors by computing the bias towards the accumulation of...

OncodriveCLUST is a method aimed to identify genes whose mutations are biased towards a large spatial clustering. This method is designed to exploit the feature that mutations...

Python tab files parsing and validating schema tools.

Method to identify genomic regions, both coding and non-coding, bearing mutations with significant shift towards high functional impact across a cohort of tumos (FMbias), which...

Analyses somatic mutations in thousands of tumor genomes to identify cancer driver genes. Requirements: IntOGen depends on Python 3.4 or above and some python libraries. If you...

A tool aimed at the rational design of cancer gene panels. It estimates the cost-effectiveness of the designed panel on a cohort of tumors and provides reports on the importance...