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Ultra-deep, long-read nanopore sequencing of mock microbial community standards
Ultra-deep, long-read nanopore sequencing of mock microbial community standards -
Marquette University BIOL4802 Experimental Microbiology
Single isolates from an undergraduate microbiology laboratory class at Marquette University (BIOL4802). In this class, students think of a question about a particular... -
Evaluating Nanopore-based bacterial variant calling
Benchmark various nanopore-based variant callers on 14 different species. Samples are sequenced on the latest (September 2023) R10.4.1 Nanopore flowcells and Illumina. Ground... -
Antimicrobial Surveillance from Brigham & Women's Hospital, Boston MA
The goal of this project is to identify carbapenemases and other beta-lactamases in clinical isolates with WGS and assess their mobilization potential . The results can support... -
Staphylococcus aureus subsp. aureus 15981 Transcriptome or Gene expression
Complete transcriptome analysis of Staphylococcus aureus. -
BactID
Bacterial identification run in house at UCLA -
Whole-genome sequencing of bacteria, fungi, plants, and metagenomes
Species and metagenomic samples used for the FELIX (Finding Engineering-Linked Indicators) project. -
Transcriptome data of plant extracts
The increase in bacterial resistance and the decline in the effectiveness of antimicrobial agents have forced us to look for antimicrobial compounds from plant extracts that are... -
Transcriptome data of the foodborne pathogenic bacteria
Verify the antibacterial mechanism of plant extracts against Staphylococcus aureus, Bacillus cereus, and Vibrio parahaemolyticus. -
Genomic Catalog of Human Bladder Bacteria
We have developed a bladder-specific bacterial reference database consisting of 1134 genomes to aid in genomic, functional, and experimental analyses of the human bladder... -
Bacteria Genome sequencing and assembly
The genetic disorder cystic fibrosis is a life-limiting condition affecting ~70,000 people worldwide. Targeted, early, treatment of the dominant infecting species, Pseudomonas... -
A quantitative model for the transcriptional landscape of the bacterial cell ...
Regulation of gene activity during the cell cycle is fundamental to bacterial replication but is challenging to study in unperturbed, asynchronous bacterial populations. Using... -
Machine-learning based detection of adventitious microbes in T cell therapy c...
The goal of this work was to develop an approach for the rapid and sensitive detection of microbial contaminants at low abundance from low volume of samples during the... -
Comparison of Nine Extraction Methods for Bacterial Identification Using the ...
The purpose of this study was to identify a universal extraction method that could be coupled with ONT MinION sequencing for use in forensic situations for rapid identification... -
Staphylococcus aureus Genome sequencing and assembly
Virulence factor secretion and ROS resistance in Staphylococcus aureus</p><p>isolates of the human and zoonotic genetic lineages CC8, CC22 and CC398 -
Clinical evaluation of mNGS in unbiased pathogens diagnosis of UTIs
Advance the implementation of mNGS in pathogen diagnosis in clinics. -
Salmonella,Vibrio parahaemolyticus,Staphylococcus aureus Genome sequencing an...
Comparative genome studies of these bacteria. -
Bacteria and yeast pathogens sequenced from human blood culture specimens
Bloodstream infection is a major cause of morbidity and mortality worldwide. Early pathogen detection and administration of appropriate antimicrobial therapy substantially... -
Transcriptome data of the three strains
Multiple cellular metabolic pathways were altered by CC2 in S. aureus ATCC29213, B. cereus Y1, and Vibrio parahaemolyticus ATCC17802, and comparative transcriptome analysis...
